Sequence
atgc intronic sequence ATGC exonic sequence...actacccaatagatttcagtttcacctatcaaaaaactgcaagtctagtttcagttctcctcatcagagctctaaaatcatattatattttcaatgccagGTGGGAAATATGATCTTCTGGCTGTTTTTCAGCATTCTTGGTCAGCCAATGTGTGTGCTTCTATATTACCATGACTTGATGAATCGAAAAGAGACAACTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g01930.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA13G16560.1 (Glycine max), 3'ss of exon 15
--------actacccaa-tagatttcagtttcacctatcaaaaaactgcaagtctagtttcagttctcctcatcagagctctaaaatcatattatattttcaatgccagGTGGGAAATATGATCTTCTGGCTGTTTTTCAGCATTCTTGGTCAGCCAATGTGTGTGCTTCTATATTACCATGACTTGATGAATCGAAAAGAGACAACTG
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gtacgtctgctatttaagcatattgattcataatatatcttattactcca---tcatcttgaatttgattcattggttttttaatttgtttttgtcttc---atgccagGTTGGAAATATGATTTTTTGGTTCATATTCAGTATTCTTGGTCAACCTATGTGCGTACTGCTATATTACCATGACTTAATGAATAGGAAAGGCAAACTTG
upper sequence: Vv11s0016g01930.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA17G06120.1 (Glycine max), 3'ss of exon 15
actacccaatagatttcagtttcacctatcaaaaaactgcaagtctagtttcagttctcctcatcagagctctaaaa-----------tcatattatattttcaatgccagGTGGGAAATATGATCTTCTGGCTGTTTTTCAGCATTCTTGGTCAGCCAATGTGTGTGCTTCTATATTACCATGACTTGATGAATCGAAAAGAGACAACTG
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-gtacgtctgctatttaagtat-atcagttcataaatcataatgtatcttataactcccatcatcttgaatttgattcgttggttttttaatgttattttcttcatgccagGTTGGAAATATGATTTTTTGGTTCATATTCAGTATCCTTGGTCAACCTATGTGTGTACTGCTATACTACCATGACTTGATGAATAGGAAAGGCAAACTTG
upper sequence: Vv11s0016g01930.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: AT2G19450.1 (Arabidopsis thaliana), 3'ss of exon 15
---------------actacccaatagatt--tcagtttcacctatcaaaaaactgcaagtctagtttcagttct----cctcatcagagctctaaaatcatattatat----tttcaatgccagGTGGGAAATATGATCTTCTGGCTGTTTTTCAGCATTCTTGGTCAGCCAATGTGTGTGCTTCTATATTACCATGACTTGATGAATCGAAAAGAGACAACTG
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gtatgctctcaaaacccgagaaaatagaacgaataactctttctttcatagcctagccatttaaatcgcaatgctgaaacttaataataaaggtgatctgttttggaatgggatcatattattagGTGGGGAACATGATCTTCTGGTTCATCTTCTGCATTTTCGGACAACCGATGTGTGTGCTTCTTTATTACCACGACCTGATGAACCGAAAAGGATCGATGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tagtttcagttctcctcatcagagctctaaaatcatattatattttcaatgccagGTGGGAAATATGATCTTCTGGCTGTTTTTCAGCATTCTTGGTCAGCCAATGTGTGTGCTTCTATATTACCATGACTTGATGAATCGAAAAGAGACAACTG
ctctaaa putative branch site (score: 3)
tattttc putative PPT
tctaaaatcatattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
actacccaatagatttcagtttcacctatcaaaaaactgcaagtctagtttcagttctcctcatcagagctctaaaatcatattatattttcaatgccagGTGGGAAATATGATCTTCTGGCTGTTTTTCAGCATTCTTGGTCAGCCAATGTGTGTGCTTCTATATTACCATGACTTGATGAATCGAAAAGAGACAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
-ctaccca
- - - - - - - - - - - - - - -caaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatca