Sequence
atgc intronic sequence ATGC exonic sequence...cacttagaccattgttttggtggtaaaaatgtccccatggtattctactacttcctcgtgcttccccattagtaattttctattctttttcccttttcagATACCTTACTTGTTGTGTGCACTGGGAGATGGTCATTTGTTGAACTTTTTACTGAACATGAGTACTGGTGAGTTAACAGATAGGAAAAAGGTGTCTCTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA05G30530.1 (Glycine max), 3'ss of exon 15
cacttagaccattgttttggtggtaaaaatgtccccatggtattctactacttcctcgtgcttccccatta--gtaattttctattctttttcccttttcagATACCTTACTTGTTGTGTGCACTGGGAGATGGTCATTTGTTGAACTTTTTACTGAACATGAGTACTGGTGAGTTAACAGATAGGAAAAAGGTGTCTCTTG
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--attgaggcattgcttaactttcaatgtcacaagtttaatggtagtttccttcttaaaaatatcctattaaagtgtgttgctttttcaatttattctccagATATCGTACTTGCTATGTGCTCTCGGTGATGGCCATCTCTTAAACTTTATGTTGAATACAAGTACTGGTGAATTAGCAGATAGGAAAAAGGTATCTCTAG
upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA08G13680.1 (Glycine max), 3'ss of exon 15
cacttagaccattgttttggtggtaaaaatgt---ccccatggtattctactacttcctcgtgcttccccattagtaattttctattctttttcccttttcagATACCTTACTTGTTGTGTGCACTGGGAGATGGTCATTTGTTGAACTTTTTACTGAACATGAGTACTGGTGAGTTAACAGATAGGAAAAAGGTGTCTCTTG
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---ttgaggcattgcttaactttcaatgtcacaagtttaatggtagtttccttcttaaaaacatcttattaaagtgtgttgcttttttcattttattctccagATATCGTACTTGCTATGTGCCCTCGGTGATGGCCATCTCTTAAACTTTATGTTGAATACTAGTACCGGTGAATTAACAGATAGGAAAAAGGTATCTCTAG
upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA12G08330.1 (Glycine max), 3'ss of exon 2
cacttagaccattgttttggtggtaaaaatgt---ccccatggtattctactacttcctcgtgcttccccattagtaattttctattctttttcccttttcagATACCTTACTTGTTGTGTGCACTGGGAGATGGTCATTTGTTGAACTTTTTACTGAACATGAGTACTGGTGAGTTAACAGATAGGAAAAAGGTGTCTCTTG
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---ttgaggcattgcttaactttcaatgtcacaagtttaatggtagtttccttcttaaaaacatcttattaaagtgtgttgcttttttcattttatcctccagACATCGTACTTGCTATGTGCCCTCGGTGATGGCCATCTCTTAAACTTTATGTTGAATATTAGTACCGGTGAATTAACAGATAGGAAAAAGGTATCTCTAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tactacttcctcgtgcttccccattagtaattttctattctttttcccttttcagATACCTTACTTGTTGTGTGCACTGGGAGATGGTCATTTGTTGAACTTTTTACTGAACATGAGTACTGGTGAGTTAACAGATAGGAAAAAGGTGTCTCTTG
taattttctattcttt CT-rich tract
attagtaattttctat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cacttagaccattgttttggtggtaaaaatgtccccatggtattctactacttcctcgtgcttccccattagtaattttctattctttttcccttttcagATACCTTACTTGTTGTGTGCACTGGGAGATGGTCATTTGTTGAACTTTTTACTGAACATGAGTACTGGTGAGTTAACAGATAGGAAAAAGGTGTCTCTTG
- - - - - - - - - - - gtaaaaa
- - - - - - - - - - - - - - - -tccccat