1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ttttaacctcttctttcattttctgttttgggctaaaagaagttccctcctgtgagtaatgggtttaggacattgtcacattgcttttgttcttttgcagGTTAAAAGCGTGATCCCATTTAGCGAGCCGTTTACAGTGGACCCCGAAAATCCTCCCCCAGAGAAGGATTACAATTTATACTTCAAAACTTTGAAGGATG
species | Vitis vinifera |
transcript | Vv10s0003g01640.t01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TTTGCATTGCTGCTCTAGAAAGCCCTTATGCATGTGACAAGACATTTGAG GTTAAAAGCGTGATCCCATTTAGCGAGCCGTTTACAGTGGACCCCGAAAATEST: gi|351013609|gb|FQ429750.1|FQ429750
genomic: TTTGCATTGCTGCTCTAGAAAGCCCTTATGCATGTGACAAGACATTTGAGgtttgttact ... tcttttgcagGTTAAAAGCGTGATCCCATTTAGCGAGCCGTTTACAGTGGACCCCGAAAAT
EST: TTTGCATTGCTGCTCTAGAAAGCCCTTATGCATGTAACAAGACATTTGAG GTTAAAAGCGTGATCCCATTTAGCGAGCCGTTTACAGTGGACCCCGAAAATEST: gi|110724595|gb|EE100559.1|EE100559
genomic: TTTGCATTGCTGCTCTAGAAAGCCCTTATGCATGTGACAAGACATTTGAGgtttgttact ... tcttttgcagGTTAAAAGCGTGATCCCATTTAGCGAGCCGTTTACAGTGGACCCCGAAAAT
EST: TTTGCATTGCTGCTCTAGAAAGCCCTTATGCATGTGACAAGACATTTGAG GTTAAAAGCGTGATCCCATTTAGCGAGCCGTTTACAGTGGACCCCGAAAATEST: gi|161721461|gb|FC070452.1|FC070452
genomic: TTTGCATTGCTGCTCTAGAAAGCCCTTATGCATGTGACAAGACATTTGAGgtttgttact ... tcttttgcagGTTAAAAGCGTGATCCCATTTAGCGAGCCGTTTACAGTGGACCCCGAAAAT
EST: TTTGCATTGCTGCTCTAGAAAGCCCTTATGCATGTGACAAGACATTTGAG GTTAAAAGCGTGATCCCATTTAGCGAGCCGTTTACAGTGGACCCCGAAAATEST: gi|351019257|gb|FQ429417.1|FQ429417
genomic: TTTGCATTGCTGCTCTAGAAAGCCCTTATGCATGTGACAAGACATTTGAGgtttgttact ... tcttttgcagGTTAAAAGCGTGATCCCATTTAGCGAGCCGTTTACAGTGGACCCCGAAAAT
EST: TTTGCATTGCTGCTCTAGAAAGCCCTTATGCATGTAACAAGACGTTTGAG GTTAAAAGCGTGATCCCATTTAGCGAGCCGTTTACAGTGGACCCCGAAAATEST: gi|30131130|gb|CB916469.1|CB916469
genomic: TTTGCATTGCTGCTCTAGAAAGCCCTTATGCATGTGACAAGACATTTGAGgtttgttact ... tcttttgcagGTTAAAAGCGTGATCCCATTTAGCGAGCCGTTTACAGTGGACCCCGAAAAT
EST: TTTGCATTGCTGCTCTAGAAAGCTCTTATGCATGTGACAAGACATTTGAG GTTAAAAGCGTGATCCCATTTAGCGAGCCGTTTACAGTGGACCCCGAAAATEST: gi|110361661|gb|EC925153.1|EC925153
genomic: TTTGCATTGCTGCTCTAGAAAGCCCTTATGCATGTGACAAGACATTTGAGgtttgttact ... tcttttgcagGTTAAAAGCGTGATCCCATTTAGCGAGCCGTTTACAGTGGACCCCGAAAAT
EST: TTTGCATTGCTGCTCTAGAAAGCCCTTATGCATGTAACAAGACATTTGAG GTTAAAAGCGTGATCCCATTTAGCGAGCCGTTTACAGTGGACCCCGAAAAT
genomic: TTTGCATTGCTGCTCTAGAAAGCCCTTATGCATGTGACAAGACATTTGAGgtttgttact ... tcttttgcagGTTAAAAGCGTGATCCCATTTAGCGAGCCGTTTACAGTGGACCCCGAAAAT
cctcctgtgagtaatgggtttaggacattgtcacattgcttttgttcttttgcagGTTAAAAGCGTGATCCCATTTAGCGAGCCGTTTACAGTGGACCCCGAAAATCCTCCCCCAGAGAAGGATTACAATTTATACTTCAAAACTTTGAAGGATG
ttgcttttgttctttt CT-rich tract
ttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttaacctcttctttcattttctgttttgggctaaaagaagttccctcctgtgagtaatgggtttaggacattgtcacattgcttttgttcttttgcagGTTAAAAGCGTGATCCCATTTAGCGAGCCGTTTACAGTGGACCCCGAAAATCCTCCCCCAGAGAAGGATTACAATTTATACTTCAAAACTTTGAAGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - cctcttc
- - - - - - - - - - - - -ttttggg
- - - - - - - - - - - - - - - - - aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattgct