1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gttgtaatgatctgtgtgagattgcttgtctcaatataatctccctgttttattttctttccaatatggttatgaattcccatcacaatgaactgttcagGTGGTGTCAGAGTACCGGAAAAGAGGAATGGACTTTATCCTCCAAGCAATCAACCATCCAACCTATCTGGAAGATCTCACTGGATTAACAGAGCTGATGA
species | Vitis vinifera |
transcript | Vv10s0003g01150.t01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TGACACTTGTGGGTCATTCCTCAAATAGTTGCACAGCTTGTTGTGATACT GTGGTGTCAGAGTACCGGAAAAGAGGAATGGACTTTATCCTCCAAGCAATCEST: gi|110383875|gb|EC948279.1|EC948279
genomic: TGACACTTGTGGGTCATTCCTCAAATAGTTGCACAGCTTGTTGTGATACTgtaagttcat ... aactgttcagGTGGTGTCAGAGTACCGGAAAAGAGGAATGGACTTTATCCTCCAAGCAATC
EST: TGACACTTGTGGGTCACTCCTCAAATAGTTGCACAGCTTGTTGTGATACT GTGGTGTCAGAGTACCGGAAAAGAGGAATGGACTTTATCCTCCAAGCAATCEST: gi|352773017|gb|FQ470632.1|FQ470632
genomic: TGACACTTGTGGGTCATTCCTCAAATAGTTGCACAGCTTGTTGTGATACTgtaagttcat ... aactgttcagGTGGTGTCAGAGTACCGGAAAAGAGGAATGGACTTTATCCTCCAAGCAATC
EST: TGACACTTGTGGGTCATTCCTCAAATAGTTGCACAGCTTGTTGTGATACT GTGGTGTCAGAGTACCGGAAAAGAGGAATGGACTTTATCCTCCAAGCAATCEST: gi|352764553|gb|FQ472910.1|FQ472910
genomic: TGACACTTGTGGGTCATTCCTCAAATAGTTGCACAGCTTGTTGTGATACTgtaagttcat ... aactgttcagGTGGTGTCAGAGTACCGGAAAAGAGGAATGGACTTTATCCTCCAAGCAATC
EST: TGACACTTGTGGGTCATTCCTCAAATAGTTGCACAGCTTGTTGTGATACT GTGGTGTCAGAGTACCGGAAAAGAGGAATGGACTTTATCCTCCAAGCAATCEST: gi|352778258|gb|FQ465568.1|FQ465568
genomic: TGACACTTGTGGGTCATTCCTCAAATAGTTGCACAGCTTGTTGTGATACTgtaagttcat ... aactgttcagGTGGTGTCAGAGTACCGGAAAAGAGGAATGGACTTTATCCTCCAAGCAATC
EST: TGACACTTGTGGGTCATTCCTCAAATAGTTGCACAGCTTGTTGTGATACT GTGGTGTCAGAGTACCGGAAAAGAGGAATGGACTTTATCCTCCAAGCAATC
genomic: TGACACTTGTGGGTCATTCCTCAAATAGTTGCACAGCTTGTTGTGATACTgtaagttcat ... aactgttcagGTGGTGTCAGAGTACCGGAAAAGAGGAATGGACTTTATCCTCCAAGCAATC
tgttttattttctttccaatatggttatgaattcccatcacaatgaactgttcagGTGGTGTCAGAGTACCGGAAAAGAGGAATGGACTTTATCCTCCAAGCAATCAACCATCCAACCTATCTGGAAGATCTCACTGGATTAACAGAGCTGATGA
tattttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtaatgatctgtgtgagattgcttgtctcaatataatctccctgttttattttctttccaatatggttatgaattcccatcacaatgaactgttcagGTGGTGTCAGAGTACCGGAAAAGAGGAATGGACTTTATCCTCCAAGCAATCAACCATCCAACCTATCTGGAAGATCTCACTGGATTAACAGAGCTGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - tgtgtga
- - - - - - - - - - - -gcttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccatca