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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattattttccctgagtctccataatcattatgttccagtgtgtgcactcatagtcctgttgacaattttgtgggatttttattttttatttatttgattgggaaaattctttgaaatgttggacctacttatcctttaccagGTTCAAGAATATTCTTCGGCCTATAGCTGAGGCATGCATTACAAAGGAGCAACAGAAATATGTTGATTTTGAATCTTTCTTCACTCACACAATTTGTCAT

Basic information

species Vitis vinifera
transcript Vv09s0018g01600.t01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0018g01600.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA13G04150.1 (Glycine max), 3'ss of exon 15
gtatattattttccctgagtctccataatcattatgttccagtgtgtgcactcatagtcctgttgacaattttgtgggatttttattttttatttatttgattgggaaaattctttgaaatgttggacctacttatcctttaccagGTTCAAGAATATTCTTCGGCCTATAGCTGAGGCATGCATTACAAAGGAGCAACAGAAATATGTTGATTTTGAATCTTTCTTCACTCACACAATTTGTCAT
                 | | |   | | | | |  || | |   ||    |||   | |   |  ||||| ||   |  | |  |   || |||||||   |      ||  |||       || ||||    || ||| |||||||||||| |||||||||  ||||||||||  || ||  || |||| || |||||  || |||| ||||||||||| ||||| || || ||||||||||||
---------------gtaatgtttctgaccctaaaatttctg---gtttgttcaagttacgactttcaattgtgaatgggtctcttccattttttattttcctaaatggatatttta------tgaacctgtcaattctt-accagGTTCAAGCATATTCTTCTTCCTATAGCTGCTGCCTGTGTTGCAAATGACCAACAAGAACATGTAGATTTTGAATCATTCTTTACACATACAATTTGTCAT

upper sequence: Vv09s0018g01600.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: AT1G79690.1 (Arabidopsis thaliana), 3'ss of exon 15
gtatattattttccctgagtctccataatcattatgttccagtgtgtgcactcatagtcctgttgacaattttgtgggatttttattttttatttatttgattgggaaaattctttgaaat---gttggacctac---ttatcctttaccagGTTCAAGAATATTCTTCGGCCTATAGCTGAGGCATGCATTACAAAGGAGCAACAGAAATATGTTGATTTTGAATCTTTCTTCACTCACACAATTTGTCAT
                                                                         ||    |   |  ||  |   ||||| ||    |||     |   |||    |   ||  |    || | |||| | |||||  |  ||||| |   ||||||||||||      ||| |  ||||| ||      ||  ||||||||||| ||||||||||||||||| ||||| |||
-------------------------------------------------------------------------gtaatgtcccttcttcctccatatttcatcaataaacggtgtcataattacatctaactaatgcttttttcttttctagGTTTGAACATATTTTAAAGCCTATAGCTGAAATCACCATCAGCAAGGAACAGAGAGGATTAGTTGATTTTGATTCTTTCTTCACTCACACCATTTGCCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttatttgattgggaaaattctttgaaatgttggacctacttatcctttaccagGTTCAAGAATATTCTTCGGCCTATAGCTGAGGCATGCATTACAAAGGAGCAACAGAAATATGTTGATTTTGAATCTTTCTTCACTCACACAATTTGTCAT
    atttgat  putative branch site (score: 5)
                                    cctacttatccttt  putative PPT
               aaaattctttgaaat  TA-rich tract