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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgattaaattgaagtgaaatgtaagaaaacatttttaaaacaatgcaaatggcctaaatcattcatctttgcttttcatgatttctagGCAAGCCCACGCATTCGCTTCAACAAGGACGGCACTCTCTTGGCTGTTTCTGCTAATGAGAATTCGATTAAAATCTTGGCTAATTCTGATGGTCTTAGAT

Basic information

species Vitis vinifera
transcript Vv09s0002g08370.t01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA07G03180.1 (Glycine max), 3'ss of exon 14
gtaagttgattaaattgaagtgaaatgtaagaaaacatttttaaaacaatgcaaatggcctaaatcattcatctttgcttt-tcatgatttctagGCAAGCCCACGCATTCGCTTCAACAAGGACGGCACTCTCTTGGCTGTTTCTGCTAATGAGAATTCGATTAAAATCTTGGCTAATTCTGATGGTCTTAGAT
||||||| ||||  ||   ||    || |     | | | |  ||| | |   | | || |       | ||  |||| |  || | |  | ||||||||||| || ||||||||||||||||| || ||||| || ||||| ||||| |||||||||   |||||||| || || |||   |||||| || | |
gtaagttaattattttattgt----tggagagctatactctagaaatagt---agttgcttg-----ctaattgttgcctgatcttaaactttagGCAAGCCCGCGTATTCGCTTCAACAAGGATGGAACTCTTTTAGCTGTCTCTGCAAATGAGAATGGAATTAAAATTTTAGCCAATGGGGATGGTATTCGCT

upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA08G22910.2 (Glycine max), 3'ss of exon 16
gtaagttgattaaattgaagtgaaatgtaagaaaacatttttaaaacaatgcaaatggcctaaatcattcatctttgcttt-tcatgatttctagGCAAGCCCACGCATTCGCTTCAACAAGGACGGCACTCTCTTGGCTGTTTCTGCTAATGAGAATTCGATTAAAATCTTGGCTAATTCTGATGGTCTTAGAT
||||||| ||||  ||   |  || || |       | | |  ||| | |   | | || |       | ||  |||| |  || | |  | ||||| |||||||||||||||||||||||||| || || || || ||||| ||||| |||||||||   |||||||| || || |||   |||||| || | |
gtaagttaattattttattgcaaattggagagctggactctagaaatagt---agttgcttg-----ctaattgttgcctaatcttaaactttagGCGAGCCCACGCATTCGCTTCAACAAGGATGGAACACTTTTAGCTGTCTCTGCAAATGAGAATGGAATTAAAATTTTAGCCAATGGGGATGGTATTCGTT

upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA13G44420.2 (Glycine max), 3'ss of exon 16
gtaagttgattaaattgaagtgaaatgtaagaaaacatttttaaaacaatgcaaatggcctaaatcattcatctttgcttttcatgatttctagGCAAGCCCACGCATTCGCTTCAACAAGGACGGCACTCTCTTGGCTGTTTCTGCTAATGAGAATTCGATTAAAATCTTGGCTAATTCTGATGGTCTTAGAT
||||||| ||||  ||   |  || || |   |  || | |        ||||||| |    | |   | ||  |  | ||  ||    |||||||||||||||| || || || |||||||| ||  |||| || ||||||||||| |||||||||   ||||||||||| || ||| | |||||| ||    
gtaagttcattattttattgcaaattggat--agccagtctc-------tgcaaatagt---agttgctaattgtaaccttatat----tctagGCAAGCCCACGAATCCGTTTTAACAAGGATGGAGCTCTTTTAGCTGTTTCTGCAAATGAGAATGGAATTAAAATCTTAGCCAATGCAGATGGTATTC---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161705488|gb|FC057516.1|FC057516
EST:     TTCAACTTCTAACAATCCTTGATGCGGAAGGAGGGCTTCCAGGGCTTCCT                         GCAAGCCCACGCATTCGCTTCAACAAGGACGGCACTCTCTTGGCTGTTTCT
genomic: TTCAACTTCTAACAATCCTTGATGCGGAAGGAGGGCTTCCAGGGCTTCCTgtaagttgat ... tgatttctagGCAAGCCCACGCATTCGCTTCAACAAGGACGGCACTCTCTTGGCTGTTTCT
EST: gi|71862780|gb|DT011835.1|DT011835
EST:     TTCAACTTCTAACAATCCTTGATGCGGAAGGAGGGCTTCCAGGGCTTCCT                         GCAAGCCCACGCATTCGCTTCAACAAGGACGGCACTCTCTTGGCTGTTTCT
genomic: TTCAACTTCTAACAATCCTTGATGCGGAAGGAGGGCTTCCAGGGCTTCCTgtaagttgat ... tgatttctagGCAAGCCCACGCATTCGCTTCAACAAGGACGGCACTCTCTTGGCTGTTTCT
EST: gi|71857073|gb|DT006128.1|DT006128
EST:     TTCAACTTCTAACAATCCTTGATGCGGAAGGAGGGCTTCCAGGGCTTCCT                         GCAAGCCCACGCATTCGCTTCAACAAGGGCGGCACTCTCTTGGCTGTTTCT
genomic: TTCAACTTCTAACAATCCTTGATGCGGAAGGAGGGCTTCCAGGGCTTCCTgtaagttgat ... tgatttctagGCAAGCCCACGCATTCGCTTCAACAAGGACGGCACTCTCTTGGCTGTTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaaaacaatgcaaatggcctaaatcattcatctttgcttttcatgatttctagGCAAGCCCACGCATTCGCTTCAACAAGGACGGCACTCTCTTGGCTGTTTCTGCTAATGAGAATTCGATTAAAATCTTGGCTAATTCTGATGGTCTTAGAT
                  gcctaaa  putative branch site (score: 3)
                                tctttgcttttcat  putative PPT
                     taaatcatt  TA-rich tract