1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaaggtgtttagttaaagtaaagagtgcagatggattcatcatcctgtttcagctgctgatggtaaagatctgttctctgattttaatattttatcgttttgggcagCCTGAGCCAGAGTTCCGGCCACCAATGTCAGAAGTGGTGCAAGCACTGGTGCGGCTAGTCCAGCGGGCAAACATGAGCAAGAGAACCATTAGTAACGAAC
species | Vitis vinifera |
transcript | Vv09s0002g00150.t01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CAGTCAAGTCTCTCTCCAGGTTCGCTGATGTGATTGCTCTGTGTGTCCAG CCTGAGCCAGAGTTCCGGCCACCAATGTCAGAAGTGGTGCAAGCACTGGTGEST: gi|349830454|gb|FQ416752.1|FQ416752
genomic: CAGTCAAGTCTCTCTCCAGGTTCGCTGATGTGATTGCTCTGTGTGTCCAGgtaaggtgtt ... ttttgggcagCCTGAGCCAGAGTTCCGGCCACCAATGTCAGAAGTGGTGCAAGCACTGGTG
EST: CAGTCAAGTCTCTCTCCAGGTTCGCTGATGTGATTGCTCTGTGTGTCCAG CCTGAGCCAGAGTTCCGGCCACCAATGTCAGAAGTGGTGCAAGCACTGGTGEST: gi|110391079|gb|EC956033.1|EC956033
genomic: CAGTCAAGTCTCTCTCCAGGTTCGCTGATGTGATTGCTCTGTGTGTCCAGgtaaggtgtt ... ttttgggcagCCTGAGCCAGAGTTCCGGCCACCAATGTCAGAAGTGGTGCAAGCACTGGTG
EST: CAGTCAAGTCTCTCTCCAGGTTCGCTGATGTGATTGCTCTGTGTGTCCAG CCTGAGCCAGAGTTCCGGCCACCAATGTCAGAAGTGGTGCAAGCACTGGTGEST: gi|110360391|gb|EC923453.1|EC923453
genomic: CAGTCAAGTCTCTCTCCAGGTTCGCTGATGTGATTGCTCTGTGTGTCCAGgtaaggtgtt ... ttttgggcagCCTGAGCCAGAGTTCCGGCCACCAATGTCAGAAGTGGTGCAAGCACTGGTG
EST: CAGTCAAGTCTCTCTCCAGGTTCGCTGATGTGATTGCTCTGTGTGTCCAG CCTGAGCCAGAGTTCCGGCCACCAATGTCAGAAGTGGTGCAAGCACTGGTGEST: gi|110379506|gb|EC944705.1|EC944705
genomic: CAGTCAAGTCTCTCTCCAGGTTCGCTGATGTGATTGCTCTGTGTGTCCAGgtaaggtgtt ... ttttgggcagCCTGAGCCAGAGTTCCGGCCACCAATGTCAGAAGTGGTGCAAGCACTGGTG
EST: CAGTCAAGTCTCTCTCCAGGTTCGCTGATGTGATTGCTCTGTGTGTCCAG CCTGAGCCAGAGTTCCGGCCACCAATGTCAGAAGTGGTGCAAGCACTGGTGEST: gi|30321691|gb|CD004953.1|CD004953
genomic: CAGTCAAGTCTCTCTCCAGGTTCGCTGATGTGATTGCTCTGTGTGTCCAGgtaaggtgtt ... ttttgggcagCCTGAGCCAGAGTTCCGGCCACCAATGTCAGAAGTGGTGCAAGCACTGGTG
EST: CAGTCAAGTCTCTCTCCAGGTTCGCTGATGTGATTGCTCTGTGTGTCCAG CCTGAGCCAGAGTTCCGGCCACCAATGTCAGAAGTGGTGCAAGCACTGGTGEST: gi|34319519|gb|CF372273.1|CF372273
genomic: CAGTCAAGTCTCTCTCCAGGTTCGCTGATGTGATTGCTCTGTGTGTCCAGgtaaggtgtt ... ttttgggcagCCTGAGCCAGAGTTCCGGCCACCAATGTCAGAAGTGGTGCAAGCACTGGTG
EST: CAGTCAAGTCTCTCTCCAGGTTCGCTGATGTGATTGCTCTGTGTGTCCAG CCTGAGCCAGAGTTCCGGCCACCAATGTCAGAAGTGGTGCAAGCACTGGTG
genomic: CAGTCAAGTCTCTCTCCAGGTTCGCTGATGTGATTGCTCTGTGTGTCCAGgtaaggtgtt ... ttttgggcagCCTGAGCCAGAGTTCCGGCCACCAATGTCAGAAGTGGTGCAAGCACTGGTG
gctgctgatggtaaagatctgttctctgattttaatattttatcgttttgggcagCCTGAGCCAGAGTTCCGGCCACCAATGTCAGAAGTGGTGCAAGCACTGGTGCGGCTAGTCCAGCGGGCAAACATGAGCAAGAGAACCATTAGTAACGAAC
ttttaat putative branch site (score: 3)
tcgtttt putative PPT
tgattttaatatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggtgtttagttaaagtaaagagtgcagatggattcatcatcctgtttcagctgctgatggtaaagatctgttctctgattttaatattttatcgttttgggcagCCTGAGCCAGAGTTCCGGCCACCAATGTCAGAAGTGGTGCAAGCACTGGTGCGGCTAGTCCAGCGGGCAAACATGAGCAAGAGAACCATTAGTAACGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA