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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactcactcttgcttggtagcacttattttctatcttggtctgttcatgagctgttgtgtgtcattactttatatgtgtctagttaaaattttttcattccaagctgttattgacagGTAATTTGCCTATGACCTTTAGAACCCCTCCTGTTAGTCCTCCTCGGCCAAGTTACTTAACAGGAATGCGGAGGGTTTATTCTTTAGAGTTCAGGCCACA

Basic information

species Vitis vinifera
transcript Vv08s0058g00890.t01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA09G41510.1 (Glycine max), 3'ss of exon 15
-----------------------------gtaactcactcttgcttggtagcact--tattttctatcttg-gtctgttcatg---agctgttgtgtgtcattactttatatgtgtctagttaaaattttttcattccaagctgttattgacagGTAATTTGCCTATGACCTTTAGAACCCCTCCTGTTAGTCCTCCTCGGCCAAGTTACTTAACAGGAATGCGGAGGGTTTATTCTTTAGAGTTCAGGCCACA
                             || | ||  |   | |   |  || |   ||||  ||   ||  ||| || |     |  |  | |||| || | | |  |   |   |  |     ||| || ||| |  | || |  || ||||  | |||||| ||||||| ||||| ||||| || ||||||||||| ||||||||  ||||  |||||||  | |||| ||| || ||||| ||||| ||
gtagatctctctttccattttacttaatggttaatcttttgggataatttccaatgcaatttggtaaagtgtatctcttaacatcaatttaatttgtgacaattcctgctgctttgttgttggctttttgtttattgcttgttgct-ctggcagGACACTTGCCTCTGACCTTCAGAACTCCTCCAGTCAGTCCTCCTCGCCCAAGTTATATAACTCGAATGCGTCGAGTTTGTTCATTGGAGTTTAGGCCCCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71861670|gb|DT010725.1|DT010725
EST:     TAGTCTTATTGGACTAGCTCGTTCAACTTCATGGTTTGACATGAATGGAG                         GTAATTTGCCTATGACCTTTAGAACTCCTCCTGTTAGTCCTCCTCGGCCAA
genomic: TAGTCTTATTGGACTAGCTCGTTCAACTTCATGGTTTGACATGAATGGAGgtaactcact ... ttattgacagGTAATTTGCCTATGACCTTTAGAACCCCTCCTGTTAGTCCTCCTCGGCCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattactttatatgtgtctagttaaaattttttcattccaagctgttattgacagGTAATTTGCCTATGACCTTTAGAACCCCTCCTGTTAGTCCTCCTCGGCCAAGTTACTTAACAGGAATGCGGAGGGTTTATTCTTTAGAGTTCAGGCCACA
      tttatatgtgtctagt  TA-rich tract