Sequence
atgc intronic sequence ATGC exonic sequence...ctcatgtcccactcacgtatacttgaattaaagattcttttgtccacagatttgagttatttccagattgttaacatttctgaagtgctgattattgcagGTATGCGTCTCTACAACAAATAGGAACTTCCCTGGGCGAATGGGGCACAAAGAAGGCCAGATATATCTAGCTTCTCCTTACACAGCAGCAGCATCTGCTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0056g01640.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA14G40570.1 (Glycine max), 3'ss of exon 14
ctcatgtcccactcacgtatacttgaattaaagattcttttgtccacagatttgagttatt--tccagattgttaa---catttctgaagtgctgattattgcagGTATGCGTCTCTACAACAAATAGGAACTTCCCTGGGCGAATGGGGCACAAAGAAGGCCAGATATATCTAGCTTCTCCTTACACAGCAGCAGCATCTGCTT
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----tgttcatctgccatatggttgcttttatatgctttctacataaatgatgagattgagagtctgagtaatttactccattgcctacgtgctggttgt-gcagGTTTGTGTTTCAACTACGAACAGGAACTTCCCGGGCCGAATGGGACACAAGGAAGGTCAAATCTATTTGGCTTCCCCTTATACAGCTGCTGCATCTGCAT
upper sequence: Vv08s0056g01640.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: AT4G13430.1 (Arabidopsis thaliana), 3'ss of exon 14
ctcatgtcccactcacgtatact-tgaattaaagattcttttgtccacagatttgagttatttccagattgtta---acatttctgaagtgctgattattgcagGTATGCGTCTCTACAACAAATAGGAACTTCCCTGGGCGAATGGGGCACAAAGAAGGCCAGATATATCTAGCTTCTCCTTACACAGCAGCAGCATCTGCTT
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-gtacgtacccattacttaccctacttatccaattatctgcacttcacctattcttgaaagtg--agactaacaaagacgtgttttaaaa--tgtttgttacagGTGTGTGTCTCAACGACAAACAGGAACTTCCCCGGTCGGATGGGACACAAAGAAGGGCAAATTTACTTAGCGTCTCCTTACACTGCTGCAGCCTCGGCTT
upper sequence: Vv08s0056g01640.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: PP1S227_66V6.1 (Physcomitrella patens), 3'ss of exon 12
--------------------------------ctcatgtcccactcacgtatactt-------gaattaaagattcttttgtccaca---gatt------tgagttatttccaga-ttgttaa--catttctgaagtgctgattattg---cagGTATGCGTCTCTACAACAAATAGGAACTTCCCTGGGCGAATGGGGCACAAAGAAGGCCAGATATATCTAGCTTCTCCTTACACAGCAGCAGCATCTGCTT
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gtatatttgtctaaattcttttattgtcagcgcccatgctttatttgtttttacttcttcactacggtggtatctttcctatctgcgtttgattgtcagatagcctatttatggagctacttatccactttcaaatttttctatgttgacgcagGTTTGTGTTTCAACTACCAACCGTAACTTTCCTGGGCGAATGGGACACAAAGAGGGGCAAATATATCTTGCATCACCTTACACTGCCGCTGCCTCCGCTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acagatttgagttatttccagattgttaacatttctgaagtgctgattattgcagGTATGCGTCTCTACAACAAATAGGAACTTCCCTGGGCGAATGGGGCACAAAGAAGGCCAGATATATCTAGCTTCTCCTTACACAGCAGCAGCATCTGCTT
ttaacattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctcatgtcccactcacgtatacttgaattaaagattcttttgtccacagatttgagttatttccagattgttaacatttctgaagtgctgattattgcagGTATGCGTCTCTACAACAAATAGGAACTTCCCTGGGCGAATGGGGCACAAAGAAGGCCAGATATATCTAGCTTCTCCTTACACAGCAGCAGCATCTGCTT
ctcatgt
- - - -cccactc
- - - - - - - - - - - - -aattaaa
- - - - - - - - - - - - - - - - - - - - - -ccacaga