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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcacattccttattcataagggctgcatcatttttatttcttctacctcgatataattgcctcaatggttagatgagcttttaaaacttgttgataaagctgttaatctcttctaactccatttttttttcttccttccggctgatgactattgccatgtggattcctcagGGAAGTTTGAG

Basic information

species Vitis vinifera
transcript Vv08s0007g08690.t01
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71870008|gb|DT019063.1|DT019063
EST:     CCAGGAGATTGTTAGAGATCCCCACTTATTCACATTCTCATTCAACAAAG                         GGAAGTTTGAG
genomic: CCAGGAGATTGTTAGAGATCCCCACTTATTCACATTCTCATTCAACAAAGgtcacattcc ... gattcctcagGGAAGTTTGAG
EST: gi|71870041|gb|DT019096.1|DT019096
EST:     CCAGGAGATTGTTAGAGATCCCCACTTATTCACATTCTCATTCAACAAAG                         GGAAGTTTGAG
genomic: CCAGGAGATTGTTAGAGATCCCCACTTATTCACATTCTCATTCAACAAAGgtcacattcc ... gattcctcagGGAAGTTTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccatttttttttcttccttccggctgatgactattgccatgtggattcctcagGGAAGTTTGAG
                       ggctgat  putative branch site (score: 4)
                                               ttcctc  putative PPT
     tttttttttctt  TA-rich tract