Sequence
atgc intronic sequence ATGC exonic sequencegtgagatactcactgttactttgagaaccttttcaacttcactagaggggaaaaaaacaaaaagcaagaaaaacaagaataaaaacaaaaaaacaatggtatcaataccagatactaaccaatatttacaacacctaatgaccagATACCATGTCGAACAGCAATGAGAGGGAGCTTTCCATTGAATGGCACATACTTCCAAGTTAATGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g03920.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA13G21460.1 (Glycine max), 3'ss of exon 21
----gtgagatactcactgttactttgagaaccttttcaacttcactagaggggaaaaaaacaaaaagcaagaaaaacaagaataaaaacaaaaaaacaatggtatcaataccagatactaaccaatatttacaacacctaatgaccagATACCATGTCGAACAGCAATGAGAGGGAGCTTTCCATTGAATGGCACATACTTCCAAGTTAATGAG
| | | ||| | | | | |||| | | | | |||| | | | | || | | ||||| | | | | ||| | || || | | ||| || ||||| | | || ||| |||||||||||||||||||| | | |||||||||||| |||||||||| || |||||||| ||||||
gtctgaatgcttatcaaaatcattgttttaaccatatgtagcttactaattcttatacattatgggaacaggggagg---gaatacatctccataga-aattcaagcattataatagactgacttgaatttatgataaata-tgagcagATACCATGTCGAACAGCTACACGGGGGAGCTTTCCACTGAATGGCACCTATTTCCAAGTCAATGAG
upper sequence: Vv08s0007g03920.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA03G34860.2 (Glycine max), 3'ss of exon 18
-gtgagatactcactgttactttgagaac-cttttcaacttcactagaggggaaaaaaacaaaaagcaagaaaaacaagaataaaaacaaaaaaacaatggtatcaataccagatactaaccaatatttacaacaccta---atgaccagATACCATGTCGAACAGCAATGAGAGGGAGCTTTCCATTGAATGGCACATACTTCCAAGTTAATGAG
|| || | | | ||| | | | || || | | | | | |||| | ||||||| | | | | || | ||| ||| | || || || | | || | | || |||| ||||||||||||||||||| ||||||||||||||||| | |||||||| || || ||||| || |||
gtctgaatgcttaattcaaatttcaacatacattgtttattaatttttatgcattataacattatagtggaaaaactaagctgggta-ggagtaattttcttatgaatgcaag-tattataataagctgaccagatatattcatgaatagATACCATGTCGAACAGCTATGAGAGGGAGCTTTCCGCTAAATGGCACCTATTTTCAAGTCAACGAG
upper sequence: Vv08s0007g03920.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: PP1S480_4V6.1 (Physcomitrella patens), 3'ss of exon 14
gtgagatactcactgttactttgagaaccttttcaacttc---actagaggggaaaaaaacaaaaagcaagaaaaacaagaataaaaacaaaaaaacaat--ggtatcaataccagatactaaccaatatttacaacacctaatgaccagATACCATGTCGAACAGCAATGAGAGGGAGCTTTCCATTGAATGGCACATACTTCCAAGTTAATGAG
|| ||| || ||| | | | ||| || |||| | || | || || | | | ||| || | | || | | ||| ||| ||||| ||| || | | | | || || ||||| |||||| ||||| |||||||| | ||||||||||| || |||||||||||||||||||||
gtaaga------ctacggcttgaattatttcttccggttttgaactaatgaaatgttaaccgaattgccattcagcctc-aatcaacccggtataaaagttgggtgccaaagccaga-acttactgtcagcttctgctgctgctg--cagATTCCATGTAAGACAGCCATGAGAGGATGGTTTCCATTGAACGGGACATACTTCCAAGTTAATGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30299419|gb|CB976213.1|CB976213EST: GCAATAGTATACGAGAAGCAAATTCCCAAACTGTCCGAGGGACACTTTTG ATACCATGTCGAACAGCAATGAGAGGGAGCTTTCCATTGAATGGCACATAC
genomic: GCAATAGTATACGAGAAGCAAATTCCCAAACTGTCCGAGGGACACTTTTGgtgagatact ... taatgaccagATACCATGTCGAACAGCAATGAGAGGGAGCTTTCCATTGAATGGCACATAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaacaatggtatcaataccagatactaaccaatatttacaacacctaatgaccagATACCATGTCGAACAGCAATGAGAGGGAGCTTTCCATTGAATGGCACATACTTCCAAGTTAATGAG
aatatttacaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagatactcactgttactttgagaaccttttcaacttcactagaggggaaaaaaacaaaaagcaagaaaaacaagaataaaaacaaaaaaacaatggtatcaataccagatactaaccaatatttacaacacctaatgaccagATACCATGTCGAACAGCAATGAGAGGGAGCTTTCCATTGAATGGCACATACTTCCAAGTTAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT