Sequence
atgc intronic sequence ATGC exonic sequence...tttggtataccaggtcaagaaagagttgttttaccatagtttattaattttttccttcatgttattataattcatttcacatgcaaatgctatgatgcagGAAACCTGATGAATATTGGAAAATGGGTGACATTATTCACACGCTCACCAATAGAAGGTGGTTGGAAAAATGTGTTGCTTATGCTGAAAGTCATGACCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g03750.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: LOC_Os02g32660.1 (Oryza sativa), 3'ss of exon 15
tttggtataccaggtcaagaaagagttgttttaccatagtttattaattttttccttcatgttattataattcatttcaca--tgcaaatgctat--gatgcagGAAACCTGATGAATATTGGAAAATGGGTGACATTATTCACACGCTCACCAATAGAAGGTGGTTGGAAAAATGTGTTGCTTATGCTGAAAGTCATGACCAA
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tcagctgtttagcttttatttagaaac----tgggaaagattgttattttgtatcctttaattgaaagatgtggtgccagagtttcaatttttattttacacagGCAAAGTGATGAATCTTGGAAGATGGGTGATATTGTGCACACACTGACTAACAGAAGGTGGTCAGAGAAGTGTGTTACTTATGCTGAAAGTCATGATCAA
upper sequence: Vv08s0007g03750.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GRMZM2G032628_T01 (Zea mays), 3'ss of exon 15
--tttggtataccaggtcaagaaagagttgttttaccatagtttattaattttttccttcatgttattataattcatttcacatgcaaatgctatgatgcagGAAACCTGATGAATATTGGAAAATGGGTGACATTATTCACACGCTCACCAATAGAAGGTGGTTGGAAAAATGTGTTGCTTATGCTGAAAGTCATGACCAA
|| || || | || | ||| | | | || || ||| | ||| | | ||||| || || | |||| || ||||||| |||||| |||||||| ||| | ||||| || || ||||| |||||||| || || ||||| ||||||||||||||||||| |||
ataatgatacacaaactctcctgtgcgttcgagagaaaaaatgccttctgcattcactttgagatat-gtggtgagtttca-atttctatttaaccgcacagGCAAAGTGATGAAACTTGGAAGATGGGTGATATTGTGCACACACTGACAAATAGGAGGTGGTTAGAGAAGTGTGTAACTTATGCTGAAAGTCATGATCAA
upper sequence: Vv08s0007g03750.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GRMZM2G073054_T02 (Zea mays), 3'ss of exon 15
-tttggtataccaggtcaagaaagagttgttttaccatagtttattaattttttccttcatgt-tattataattcatttcacatgcaaatgctatgat-gcagGAAACCTGATGAATATTGGAAAATGGGTGACATTATTCACACGCTCACCAATAGAAGGTGGTTGGAAAAATGTGTTGCTTATGCTGAAAGTCATGACCAA
| ||| || | | ||| || |||| ||| | || | | | | | | | | |||| || |||| | |||| || ||| ||||||||| ||||||||||||| | ||||| | || |||||||||||| | ||||| ||||| ||||| |||||||||||| |||
gcattttatttgagctggaatgttagtacttcatgcatattttgagtagttccaaataaacatatgatgtggtcaaattca---acattctctattaccacagGCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAATAGAAGGTGGCTTGAAAAGTGTGTCACTTATTGTGAAAGTCATGATCAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattttttccttcatgttattataattcatttcacatgcaaatgctatgatgcagGAAACCTGATGAATATTGGAAAATGGGTGACATTATTCACACGCTCACCAATAGAAGGTGGTTGGAAAAATGTGTTGCTTATGCTGAAAGTCATGACCAA
tattaat putative branch site (score: 2)
ttcatgttattataat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttggtataccaggtcaagaaagagttgttttaccatagtttattaattttttccttcatgttattataattcatttcacatgcaaatgctatgatgcagGAAACCTGATGAATATTGGAAAATGGGTGACATTATTCACACGCTCACCAATAGAAGGTGGTTGGAAAAATGTGTTGCTTATGCTGAAAGTCATGACCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - -ccaggtc
- - - - - - - - -agaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacatgc