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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctttctgggttgcattttttccttaatattaaacaaattgctatacgctaatctgagagattacgaactttatattgcgcagGATATATTGTTTTGCTCTGGTTTTCAGGACAGTTCGGGAAAGTCAG

Basic information

species Vitis vinifera
transcript Vv07s0151g00350.t01
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110729354|gb|EE105534.1|EE105534
EST:     AGATGGTCCACAAGGTATCTCAAGGTACAGGAGAG                         GATATATTGTTTTGCTCTGGTTTTCAGGACAGTTCGGGAAAGTCAG
genomic: AGATGGTCCACAAGGTATCTCAAGGTACAGGAGAGgtgagctttc ... tattgcgcagGATATATTGTTTTGCTCTGGTTTTCAGGACAGTTCGGGAAAGTCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaaacaaattgctatacgctaatctgagagattacgaactttatattgcgcagGATATATTGTTTTGCTCTGGTTTTCAGGACAGTTCGGGAAAGTCAG
                  cgctaat  putative branch site (score: 3)
                                      aactttatatt  TA-rich tract