Sequence
atgc intronic sequence ATGC exonic sequencegtatcaacttctttcacttatgcttgatgatgcatagctgtaatggttcataaagtggtttactaatcttcttatgttgtttcttcctgttcatggacacaaaagGGCCTGAAAACAGGAATGTACTATCTACGGTCACGGGCTGCAGCTGATGCCATCAAATTTACCGTTGACACCTCTATTCTCCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: LOC_Os02g56100.1 (Oryza sativa), 3'ss of exon 15
------gtatcaacttct-ttcacttatgcttgatgatgcatagctgtaatggttcataa--agtggtttactaatcttcttatgttgtttcttcctgttc---atggac--acaaaagGGCCTGAAAACAGGAATGTACTATCTACGGTCACGGGCTGCAGCTGATGCCATCAAATTTACCGTTGACACCTCTATTCTCCAG
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gtaaaatttttagtttcagttcatgttcaatttataattctgcatcaagttcttctacagttcacgtttttgcagctatcttgaatagtatatgcatgaactaaattgtttgatgccagGGCCTGAAAACTGGAATGTATTATCTAAGAACACGCGCTGCTGCCGATGCAATCAAATTCACAGTGGACACTACTCTCCTCAAG
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GRMZM2G340527_T01 (Zea mays), 3'ss of exon 15
gtatc-aacttctttcacttatgcttgatgatgcatagctgtaatggttcataaagtggtttactaatcttcttatgttgtttcttcctgttcatggaca-caaaagGGCCTGAAAACAGGAATGTACTATCTACGGTCACGGGCTGCAGCTGATGCCATCAAATTTACCGTTGACACCTCTATTCTCCAG---------------
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gtattgaacctccagccatcacagcaattatcttatccttatgg-agttcgtatt-tgacctataaaactagtggt-ttgttt-ttcctaatcttgttcaatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCAATCAAGTTTACCGTCGATACCACACTTCTAAAGGAGAATGGGAATGGG
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GRMZM2G304362_T01 (Zea mays), 3'ss of exon 15
-------------------gtatcaacttctttcacttatgcttgatgatgcatagctgtaatggttcataaagtggtttactaatcttcttatgttgtttcttcctgttcatggac-acaaaagGGCCTGAAAACAGGAATGTACTATCTACGGTCACGGGCTGCAGCTGATGCCATCAAATTTACCGTTGACACCTCTATTCTCCAG---------------
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gtatggaacctccaagactttacaggctcacagcaattgtctatcttgatggagttcgtacttaacctataaaa-aaccagtggttcgtctt---ttttttctttctaatctcgttcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA06G15350.1 (Glycine max), 3'ss of exon 15
gtatcaacttctttcacttatgcttgatg-atgcatagctgtaatggttcataa-agtggtttactaatcttcttatgttgtttcttcctgttcatggacacaaaagGGCCTGAAAACAGGAATGTACTATCTACGGTCACGGGCTGCAGCTGATGCCATCAAATTTACCGTTGACACCTCTATTCTCCAG
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ttctttgctggcttatattattctttacacacacaaagttggggaattttatgccaaatgtttgctgatca----atgtt-ttgttttttgtt--tggtcattaaagGGTCTAAAAACTGGAATGTATTATCTTCGATCACGTGCTGCAGCTGATGCTATTAAGTTCACCGTTGACACCTCTGCTCTCAGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122691528|gb|EC979583.1|EC979583EST: AACCAAATTTTGGAAAACTTACGTCCTTGCATTTTTATGCATGGTCCAAG GGCCTGAAAACAGGAATGTACTATCTACGGTCACGGGCTGCAGCTGATGCC
genomic: AACCAAATTTTGGAAAACTTACGTCCTTGCATTTTTATGCATGGTCCAAGgtatcaactt ... gacacaaaagGGCCTGAAAACAGGAATGTACTATCTACGGTCACGGGCTGCAGCTGATGCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taaagtggtttactaatcttcttatgttgtttcttcctgttcatggacacaaaagGGCCTGAAAACAGGAATGTACTATCTACGGTCACGGGCTGCAGCTGATGCCATCAAATTTACCGTTGACACCTCTATTCTCCAG
tactaat putative branch site (score: 1)
tttactaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatcaacttctttcacttatgcttgatgatgcatagctgtaatggttcataaagtggtttactaatcttcttatgttgtttcttcctgttcatggacacaaaagGGCCTGAAAACAGGAATGTACTATCTACGGTCACGGGCTGCAGCTGATGCCATCAAATTTACCGTTGACACCTCTATTCTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT