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...aagcagctgactgtatttgaaagtgttcagtcttagaaaagaatgttaatgacgactccatcttgtctggtaaaaccaaatatcattttctgtgatacagTCTGGCAATTGGGGTTGGCGGTTACCTAGTTCCATGAGCTTTGATGACTTGGAATCCGAAGCAAAGAAACTGAGAGATCTACTTTCAATCTATGGGCGGC
species | Vitis vinifera |
transcript | Vv07s0031g01540.t01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: ATGTTCTCGGGTTGGGGAATTCAGCCAGGATGAACATCCCAGCAACTCAG TCTGGCAATTGGGGTTGGCGGTTACCTAGTTCCATGAGCTTTGATGACTTGEST: gi|110699123|gb|EE075856.1|EE075856
genomic: ATGTTCTCGGGTTGGGGAATTCAGCCAGGATGAACATCCCAGCAACTCAGgtaagagaaa ... tgtgatacagTCTGGCAATTGGGGTTGGCGGTTACCTAGTTCCATGAGCTTTGATGACTTG
EST: ATGTTCTCGGGTTGGGGAATTCAGCCAGGATGAACATCCCAGCAACTCAG TCTGGCAATTGGGGTTGGCGGTTACCTAGTTCCATGAGCTTTGATGACTTGEST: gi|34543845|gb|CF512077.1|CF512077
genomic: ATGTTCTCGGGTTGGGGAATTCAGCCAGGATGAACATCCCAGCAACTCAGgtaagagaaa ... tgtgatacagTCTGGCAATTGGGGTTGGCGGTTACCTAGTTCCATGAGCTTTGATGACTTG
EST: ATGTTCTCGGGTTGGGGAATTCAGCCAGGATGAACATCCCAGCAACTCAG TCTGGCAATTGGGGTTGGCGGTTACCTAGTTCCATGAGCTTTGATGACTTGEST: gi|34544532|gb|CF512764.1|CF512764
genomic: ATGTTCTCGGGTTGGGGAATTCAGCCAGGATGAACATCCCAGCAACTCAGgtaagagaaa ... tgtgatacagTCTGGCAATTGGGGTTGGCGGTTACCTAGTTCCATGAGCTTTGATGACTTG
EST: ATGTTCTCGGGTTGGGGAATTCAGCCAGGATGAACATCCCAGCAACTCAG TCTGGCAATTGGGGTTGGCGGTTACCTAGTTCCATGAGCTTTGATGACTTGEST: gi|22015461|gb|BQ800495.1|BQ800495
genomic: ATGTTCTCGGGTTGGGGAATTCAGCCAGGATGAACATCCCAGCAACTCAGgtaagagaaa ... tgtgatacagTCTGGCAATTGGGGTTGGCGGTTACCTAGTTCCATGAGCTTTGATGACTTG
EST: ATGTTCTCGGGTTGGGGAATTCAGCCAGGATGAACATCCCAGCAACTCAG TCTGGCAATTGGGGTTGGCGGTTACCTAGTTCCATGAGCTTTGATGACTTG
genomic: ATGTTCTCGGGTTGGGGAATTCAGCCAGGATGAACATCCCAGCAACTCAGgtaagagaaa ... tgtgatacagTCTGGCAATTGGGGTTGGCGGTTACCTAGTTCCATGAGCTTTGATGACTTG
ttaatgacgactccatcttgtctggtaaaaccaaatatcattttctgtgatacagTCTGGCAATTGGGGTTGGCGGTTACCTAGTTCCATGAGCTTTGATGACTTGGAATCCGAAGCAAAGAAACTGAGAGATCTACTTTCAATCTATGGGCGGC
tgttaat putative branch site (score: 3)
tcattttct putative PPT
aaatatcattttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagcagctgactgtatttgaaagtgttcagtcttagaaaagaatgttaatgacgactccatcttgtctggtaaaaccaaatatcattttctgtgatacagTCTGGCAATTGGGGTTGGCGGTTACCTAGTTCCATGAGCTTTGATGACTTGGAATCCGAAGCAAAGAAACTGAGAGATCTACTTTCAATCTATGGGCGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - -tgactgt
- - - - - - - - - - - - - - - - - - aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaccaa