Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcctgactccaattattgattcccatttcagcagtggctctgcttgttgcttttactctttattctcttaagattttattcatggtccttttctcctttgtggtgcagATTTTTTCAACTGGAACAGAGTCGAACTTAGGTACTGTGATGGCGCATCTTTTAGTGGGGAAGGTCAAAATGAG

Basic information

species Vitis vinifera
transcript Vv07s0005g02440.t01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g02440.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA03G38430.2 (Glycine max), 3'ss of exon 3
------gtcctgactccaattattgattcccatttcagcagtggct-ctgcttgttgcttttactctttattctcttaagattttattcatggtccttttctcctttgtggtgcagATTTTTTCAACTGGAACAGAGTCGAACTTAGGTACTGTGATGGCGCATCTTTTAGTGGGGAAGGTCAAAATGAG
       || | ||   |   ||   | |    ||||    |||    | |  | |    ||||||   | |||  |  | | |  ||  ||    | || || | ||||   ||||||| || ||||||||||||||  || |  ||||||||||||| |||||||| ||||| ||  ||||||| |||
gtttttctctttaccttacgcatgcttgctttattcacttctggagattacaagatatgcttactca--agtcttgtgtgttctcttttttgcgtatattttcttgtgtg-cacagATTTCTTTAACTGGAACAGAGTTAAAGTACGGTACTGTGATGGAGCATCTTTCAGTGGAGATAGTCAAAACGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactctttattctcttaagattttattcatggtccttttctcctttgtggtgcagATTTTTTCAACTGGAACAGAGTCGAACTTAGGTACTGTGATGGCGCATCTTTTAGTGGGGAAGGTCAAAATGAG
                         ttcatggtccttttct  CT-rich tract
     tttattctcttaagat  TA-rich tract