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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgatgcaattcattagagccaaacttattcttatcatattttgaaacttaaatctgagtgatcatattttcttgctatttgacaattgacattgccttgcagTCACTAATGCTTGTCACATCTTTGAACCCT

Basic information

species Vitis vinifera
transcript Vv07s0005g00880.t01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g00880.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA02G01920.1 (Glycine max), 3'ss of exon 14
gtaagttgatgcaattcattagagccaaacttattcttatcatattttgaaacttaaatctgagtgatcatattttcttgctatttgacaattgacatt-gccttgcagTCACTAATGCTTGTCACATCTTTGAACCCT
|| ||||| ||  | | ||| ||  ||||     ||| |    ||    ||  ||| || |   |    |   |   ||||| | |  || ||   |||  |||||||||||||||||||||||||||| || ||||| 
gtgagttgttg--acttattcgaaacaaa-----tctcaaatgatgccaaatgttagatttacatccctacgctaatttgctgtgtttcacttttaattcaccttgcagTCACTAATGCTTGTCACATCCTTAAACCCG

upper sequence: Vv07s0005g00880.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA02G01930.2 (Glycine max), 3'ss of exon 14
gtaagttgatgcaattcattagagccaaactt--attcttatcatat---tttgaaacttaaatctgagtgatcatattttcttgctatttgacaattgacattgccttgcagTCACTAATGCTTGTCACATCTTTGAACCCT----
|| ||||  ||  | | ||| ||  || |  |  | |  || || ||   | | | | | | |||    || | ||  || |||  | ||  ||  ||  | |  ||||||||||||| |||||||||||||| || |||||     
gtgagttattg--acttatttgaaacacatctcaaatgataccaaattaatgttagattcagatccctatgctaat--ttactttgtgttccacttttatc-tcaccttgcagTCACTTATGCTTGTCACATCCTTAAACCCAGTAA

upper sequence: Vv07s0005g00880.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA02G01930.1 (Glycine max), 3'ss of exon 14
gtaagttgatgcaattcattagagccaaactt--attcttatcatattt---tgaaacttaaatctgagtgatcatattttcttgctatttgacaattgacattgccttgcagTCACTAATGCTTGTCACATCTTTGAACCCT
|| ||||  ||  | | ||| ||  || |  |  | |  || || |||    | | | | | |||    || | ||  || |||  | ||  ||  ||  | |  ||||||||||||| |||||||||||||| || ||||| 
gtgagttattg--acttatttgaaacacatctcaaatgataccaaattaatgttagattcagatccctatgctaat--ttactttgtgttccacttttatc-tcaccttgcagTCACTTATGCTTGTCACATCCTTAAACCCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352794271|gb|FQ479513.1|FQ479513
EST:     TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCACGAG                         TCACTAATGCTTGTCACATCTTTGAACCCT
genomic: TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCACGAGgtaagttgat ... tgccttgcagTCACTAATGCTTGTCACATCTTTGAACCCT
EST: gi|352776696|gb|FQ465494.1|FQ465494
EST:     TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCACGAG                         TCACTAATGCTTGTCACATCTTTGAACCCT
genomic: TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCACGAGgtaagttgat ... tgccttgcagTCACTAATGCTTGTCACATCTTTGAACCCT
EST: gi|352773567|gb|FQ472349.1|FQ472349
EST:     TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCACGAG                         TCACTAATGCTTGTCACATCTTTGAACCCT
genomic: TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCACGAGgtaagttgat ... tgccttgcagTCACTAATGCTTGTCACATCTTTGAACCCT
EST: gi|352781327|gb|FQ467773.1|FQ467773
EST:     TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCACGAG                         TCACTAATGCTTGTCACATCTTTGAACCCT
genomic: TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCACGAGgtaagttgat ... tgccttgcagTCACTAATGCTTGTCACATCTTTGAACCCT
EST: gi|33402398|gb|CF208025.1|CF208025
EST:     TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCATGAG                         TCACTAATGCTTGTCACATCTTTGAACCCT
genomic: TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCACGAGgtaagttgat ... tgccttgcagTCACTAATGCTTGTCACATCTTTGAACCCT
EST: gi|110412847|gb|EC978610.1|EC978610
EST:     ATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCACGAG                         TCACTAATGCTTGTCACATCTTTGAACCCT
genomic: ATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCACGAGgtaagttgat ... tgccttgcagTCACTAATGCTTGTCACATCTTTGAACCCT
EST: gi|110363110|gb|EC926680.1|EC926680
EST:     TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCATGAG                         TCACTAATGCTTGTCACATCTTTGAACCCT
genomic: TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCACGAGgtaagttgat ... tgccttgcagTCACTAATGCTTGTCACATCTTTGAACCCT
EST: gi|352773938|gb|FQ473070.1|FQ473070
EST:     TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCACGAG                         TCACTAATGCTTGTCACATCTTTGAACCCT
genomic: TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCACGAGgtaagttgat ... tgccttgcagTCACTAATGCTTGTCACATCTTTGAACCCT
EST: gi|352778134|gb|FQ467187.1|FQ467187
EST:     TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCACGAG                         TCACTAATGCTTGTCACATCTTTGAACCCT
genomic: TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCACGAGgtaagttgat ... tgccttgcagTCACTAATGCTTGTCACATCTTTGAACCCT
EST: gi|352782337|gb|FQ470240.1|FQ470240
EST:     TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCACGAG                         TCACTAATGCTTGTCACATCTTTGAACCCA
genomic: TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCACGAGgtaagttgat ... tgccttgcagTCACTAATGCTTGTCACATCTTTGAACCCT
EST: gi|110407161|gb|EC972758.1|EC972758
EST:     TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCACGAG                         TCACTAATGCTTGTCACATCTTTGAACCCT
genomic: TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCACGAGgtaagttgat ... tgccttgcagTCACTAATGCTTGTCACATCTTTGAACCCT
EST: gi|352776926|gb|FQ474233.1|FQ474233
EST:     TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCACGAG                         TCACTAATGCTTGTCACATCTTTGAACCCT
genomic: TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCACGAGgtaagttgat ... tgccttgcagTCACTAATGCTTGTCACATCTTTGAACCCT
EST: gi|110361036|gb|EC924487.1|EC924487
EST:     TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCATGAG                         TCACTAATGCTTGTCACATCTTTGAACCCT
genomic: TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCACGAGgtaagttgat ... tgccttgcagTCACTAATGCTTGTCACATCTTTGAACCCT
EST: gi|110698892|gb|EE076910.1|EE076910
EST:     TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCACGAG                         TCACTAATGCTTGTCACATCTTTGAACCCT
genomic: TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCACGAGgtaagttgat ... tgccttgcagTCACTAATGCTTGTCACATCTTTGAACCCT
EST: gi|351045827|gb|FQ441012.1|FQ441012
EST:     TGAGGGGAATTCAAGCCGATAAGGAAAGGATTTTAAAATTACTGCACGAG                         TCACTAATGCTTGTCACATCTTTGAACCCT
genomic: TGAGGGGAATTCAAGCCAATAAGGAAAGGATTTTAAAATTACTGCACGAGgtaagttgat ... tgccttgcagTCACTAATGCTTGTCACATCTTTGAACCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaatctgagtgatcatattttcttgctatttgacaattgacattgccttgcagTCACTAATGCTTGTCACATCTTTGAACCCT
                                    aattgac  putative branch site (score: 3)
                                            ttgcctt  CT-rich tract
             atcatatttt  TA-rich tract