Sequence
atgc intronic sequence ATGC exonic sequence...atggtgaatttaatggttagaattttgttaacctggaatgttgctttgaataacatgttgatttttaaaattatagattgcttttatctgtgtttgacagATAAGAACTGAAGAGATGGATGTGATAGCTGAGAGAGGGATTGCTGCTCATTATAGTGGGAGAGTGTTCGTTGGTGGTTTAATTGGACGTGCAACCAGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GRMZM2G353147_T01 (Zea mays), 3'ss of exon 14
-----atggtgaatttaatggtta----gaattttgttaacctggaatgttgctttgaataacatgttgatttttaaaattatagatt---gcttttatctgtgtttgacagATAAGAACTGAAGAGATGGATGTGATAGCTGAGAGAGGGATTGCTGCTCATTATAGTGGGAGAGTGTTCGTTGGTGGTTTAATTGGACGTGCAACCAGTG
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gtaatgttgcctacccatttgttaaactgaaactggcaaatatcaagcaaagaatgtattttcatcctgttactgattgtgacatgtttaaaattccaactgtatt--gcagATAAGAACAGAAGATATGGATTTAATAGCAGAAAGAGGCATTGCTGCACATTACAGTGGAAGAAGGGTGGCTTCTGGACCTGTTGGCCTTGGAATATCAA
upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA03G37450.1 (Glycine max), 3'ss of exon 17
-----------------------------------------atggtgaattt--aatggttagaattttgttaacctggaatgttgctttgaataacatgttgatttttaaaattatagattgcttttatctgtgtttgacagATAAGAACTGAAGAGATGGATGTGATAGCTGAGAGAGGGATTGCTGCTCATTATAGTGGGAGAGTGTTCGTTGGTGGTTTAATTGGACGTGCAACCAGTG
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gtatttttttggttgttgcttttttcaaattttacttctgcatgttccattttcaccaactaattgtttatagagcccta--gctgatccaaataaa--gttaatcatatgttttccttattagtatgtcatactctttgcagATTAGAACAGAAGAAATGGATTTGATAGCTGAGAGGGGCATTGCTGCTCATTATAGTGGGAGAGAATTTGTCACAGGCTTGGTTGGAAGTGCAACACCAA
upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA19G40050.1 (Glycine max), 3'ss of exon 15
-----------------------------atggtgaatttaatggttagaattttgttaacc--tggaatgttgctttgaataacatgttgatttttaaaattatagattgcttttatctgtgt---------ttgacagATAAGAACTGAAGAGATGGATGTGATAGCTGAGAGAGGGATTGCTGCTCATTATAGTGGGAGAGTGTTCGTTGGTGGTTTAATTGGACGTGCAACCAGTG
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gtattttttttgttgttgcctttttttaaattttacttttgcatgttccattttcactaactaattgtatatagagccctagctgatccaaataaagttaatcacaaatttttcttattagtatgtcatactctttgcagATTAGAACAGAAGAAATGGATTTGATAGCTGAGAGGGGCATTGCTGCTCATTATAGTGGGAGAGAATTTGTCACAGGGTTGGTTGGAAGTGCAACACCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352772776|gb|FQ473814.1|FQ473814EST: CAACTGTAATTCCATTTCTTTATGAGAGCATGTTTCGACTGGAAGTTCAG ATAAGAACTGAAGAGATGGATGTGATAGCTGAGAGAGGGATTGCTGCTCAT
genomic: CAACTGTAATTCCATTTCTTTATGAGAGCATGTTTCGACTGGAAGTTCAGgtcagctctt ... tgtttgacagATAAGAACTGAAGAGATGGATGTGATAGCTGAGAGAGGGATTGCTGCTCAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgaataacatgttgatttttaaaattatagattgcttttatctgtgtttgacagATAAGAACTGAAGAGATGGATGTGATAGCTGAGAGAGGGATTGCTGCTCATTATAGTGGGAGAGTGTTCGTTGGTGGTTTAATTGGACGTGCAACCAGTG
ttgatttttaaaatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atggtgaatttaatggttagaattttgttaacctggaatgttgctttgaataacatgttgatttttaaaattatagattgcttttatctgtgtttgacagATAAGAACTGAAGAGATGGATGTGATAGCTGAGAGAGGGATTGCTGCTCATTATAGTGGGAGAGTGTTCGTTGGTGGTTTAATTGGACGTGCAACCAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - -tggttag
- - - - - - - - - - - - - - - - - ggaatgt
- - - - - - - - - - - - - - - - - - - - - - - -gaataac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaatta