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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgagcctacattcagtttatgacgaggtggtgcttctctggttacctgaaggaagtaataaaatgtttgtgagaattgttgcagGATGAGTCACTTCTTTTGGATTGGAAGCAGCAGTTGGACCGTGATGGTGAAACTCTAAAAGCACAGGCAAACATTGTTAACATTCGTTCA

Basic information

species Vitis vinifera
transcript Vv07s0005g00200.t01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g00200.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GRMZM2G126453_T02 (Zea mays), 3'ss of exon 1
gt-attgagcctacattcagtttatgacgaggtggtgcttctctggttacctgaaggaagtaataaaatgtttgtgagaattgttgcagGATGAGTCACTTCTTTTGGATTGGAAGCAGCAGTTGGACCGTGATGGTGAAACTCTAAAAGCACAGGCAAACATTGTTAACATTCGTTCA
|| |||    |||   |||   |       | || |  |  ||   ||  ||||   ||  ||| ||||              || ||||||||  | || |||   |||||||||||||||||||| ||||||| |||||| || |||||  |  |||| |||| || ||||||    
gtgattatatctattgtcacact-catttggttgttattaatcatattttctgacctaaagaattaaat--------------ttacagGATGAAGCTCTACTTACAGATTGGAAGCAGCAGTTGGATCGTGATGTTGAAACCCTTAAAGCCAAATCAAATATTGGTAGCATTCGCATG

upper sequence: Vv07s0005g00200.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GRMZM2G052403_T01 (Zea mays), 3'ss of exon 7
gtattgagcctacattcagtttatgacgaggtggtgcttctctggttacc-tgaaggaagtaataaaatgtttgtgagaattgttgcagGATGAGTCACTTCTTTTGGATTGGAAGCAGCAGTTGGACCGTGATGGTGAAACTCTAAAAGCACAGGCAAACATTGTTAACATTCGTTCA
               | | |  ||  |  | |  | ||  | | |||    | ||  | ||  |   || |   | |  |   || ||||||||  | || |||   |||||||||||||||||||| ||||||| |||||| || |||||  |  ||||||||| || ||||||  | 
--------------gtgattacatctcttg-tcatactcatttagttgttattaaatatgttttttgatctaaataattaaatttacagGATGAAGCTCTACTTACAGATTGGAAGCAGCAGTTGGATCGTGATGTTGAAACCCTTAAAGCCAAATCAAACATTGGTAGCATTCGCACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110727315|gb|EE103938.1|EE103938
EST:     AGCAACTCACTCGGCTTTTTCCAAACAAAGTGATGATACAGCTGCCACAG                         GATGAGTCACTTCTTTTGGATTGGAAGCAGCAGTTGGACCGTGATGGTGAA
genomic: AGCAACTCACTCGGCTTTTTCCAAACAAAGTGATGATACAGCTGCCACAGgtattgagcc ... attgttgcagGATGAGTCACTTCTTTTGGATTGGAAGCAGCAGTTGGACCGTGATGGTGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcttctctggttacctgaaggaagtaataaaatgtttgtgagaattgttgcagGATGAGTCACTTCTTTTGGATTGGAAGCAGCAGTTGGACCGTGATGGTGAAACTCTAAAAGCACAGGCAAACATTGTTAACATTCGTTCA
                       aagtaataaaatgttt  TA-rich tract