Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagctcttagccttgcatctgttgtcttttcttatacgttctgcccttcaatcctaggatcttaaaacacatattgtactttcagGACTTCTACAGTTCCTATTCTTCTTTCAACATATGCTAAGATTTTGATGCACACTCAACCCTCAGACCCAGAACTACAGAATCAGATTTGGGCAATATTC

Basic information

species Vitis vinifera
transcript Vv06s0061g01170.t01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GRMZM2G137236_T01 (Zea mays), 3'ss of exon 16
gtaagagctcttagccttgcatctgttgtcttttcttatacgttctgcccttcaatcctaggat-cttaaaacacatattgtactttcagGACTTCTACAGTTCCTATTCTTCTTTCAACATATGCTAAGATTTTGATGCACACTCAACCCTCAGACCCAGAACTACAGAATCAGATTTGGGCAATATTC
|||||  | |  |  |||| |  ||      |  |||| | ||  |   ||   ||  |   |  |  | |  |    || | |  ||||| |   ||| ||  |||||||||| ||||| ||||| ||||| |||||||||||||||||  | ||    | ||| ||  | || ||     ||||||| 
gtaagt-cgcgaaagcttgtacttgag----taacttaaatgtcattttctatcatgttctaacgcacacactatcgttttttccatcagGGCAAGTACTGTAGCTATTCTTCTCTCAACCTATGCCAAGATATTGATGCACACTCAACCTCCTGATGTTGGACTGCAACAACAAATCCTCACAATATTT

upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GRMZM2G092741_T01 (Zea mays), 3'ss of exon 1
gtaagagctcttagccttgcatctgttgtcttttcttatacgttctgcccttcaatcctaggat-cttaaaacacatattgtactttcagGACTTCTACAGTTCCTATTCTTCTTTCAACATATGCTAAGATTTTGATGCACACTCAACCCTCAGACCCAGAACTACAGAATCAGATTTGGGCAATATTC
|||||   | | | | |   |  ||      |  |||  | ||| |   ||   ||  ||  || | |     |   ||| | | || |||||   ||| ||  |||||||||| ||||| ||||| ||||| ||||| |||||||||||  | ||    | ||| ||| | || ||     ||||||| 
gtaagttgtgtaaac-tcatacttgag----taacttcaatgttattttctatcatgttataatgcatgcgctatccatttttcatt-agGACAAGTACTGTAGCTATTCTTCTCTCAACCTATGCCAAGATATTGATCCACACTCAACCTCCTGATGTTGGACTGCAGCAACAAATCCTCACAATATTT

upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA17G05410.1 (Glycine max), 3'ss of exon 15
gtaagagctcttagccttgcatctgttgtcttttcttatacgttctgcccttcaatcctaggatcttaaaacacatattgtactttcagGACTTCTACAGTTCCTATTCTTCTTTCAACATATGCTAAGATTTTGATGCACACTCAACCCTCAGACCCAGAACTACAGAATCAGATTTGGGCAATATTC
||||| |   | |  |    | ||  | | |||  |  |  |   |||  ||    |     | ||||  | |  |  | || |||||||||||||||  || |||||||| | |||||||||||||| ||| ||||||||| ||||||  ||||||| ||| |||||||||| || ||| ||||||| 
gtaaggggaatcacaccc-tacctcatatatttcatagt-tgaaatgcattttttcctagataccttactagaggtgctttattttcagGACTTCTACTATTTCTATTCTTTTGTCAACATATGCTAAAATTCTGATGCACAGTCAACCACCAGACCCTGAATTACAGAATCAAATATGGACAATATTT

upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA12G30520.1 (Glycine max), 3'ss of exon 15
gtaagagctcttagccttgcatctgttgtct-tttcttatacgttctgcccttcaatcctaggatcttaaaacacatattgtactttcagGACTTCTACAGTTCCTATTCTTCTTTCAACATATGCTAAGATTTTGATGCACACTCAACCCTCAGACCCAGAACTACAGAATCAGATTTGGGCAATATTC
             |    | |||  || | | |||| ||   |   |||  ||    |     |||||| || |  |  | || |||||||||||||||  || |||||||| | |||||||||||||| ||| ||||||||| ||||||  ||||| | ||| ||||||||||||| ||| ||||||| 
-------------gtaaggaatcccttatttatttcatagttgaaatgcattttttcctagatatcttacaagaggtgctttattttcagGACTTCTACTATTTCTATTCTTTTGTCAACATATGCTAAAATTCTGATGCACAGTCAACCACCAGACTCTGAATTACAGAATCAGATATGGACAATATTT

upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: AT5G22770.2 (Arabidopsis thaliana), 3'ss of exon 16
gtaagagct-cttagccttgcatctgttgtcttttcttatacgttctgcccttcaatcctaggatcttaaaacacatattgtactttcagGACTTCTACAGTTCCTATTCTTCTTTCAACATATGCTAAGATTTTGATGCACACTCAACCCTCAGACCCAGAACTACAGAATCAGATTTGGGCAATATTC
|||||  |  |  |    |  |  ||   |||| || | |  |       ||| |    |||  | ||      | | || |  | |||||||| | ||  |||||||||||||||| |||||||| ||| || | |||||| |||||||| | || |||||||| || ||  |  |||||||  |||| 
gtaaggacaacacaaatgttgaattgcgctcttctcgtctttgggtatgtcttaa----tagcttttt----ttcgtttttt-ttctcagGACTCCCACCATTCCTATTCTTCTTTCCACATATGCAAAGCTTCTTATGCACGCTCAACCCCCGGATCCAGAACTGCAAAAAAAAGTTTGGGCTGTATTT

upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: AT5G22780.1 (Arabidopsis thaliana), 3'ss of exon 15
gtaagagct-cttagccttgcatctgttgtcttttcttatacgttctgcccttcaatcctaggatcttaaaacacatattgtactttcagGACTTCTACAGTTCCTATTCTTCTTTCAACATATGCTAAGATTTTGATGCACACTCAACCCTCAGACCCAGAACTACAGAATCAGATTTGGGCAATATTC
|||||  |  |  |    |  |  ||   |||| |  | |  |       ||| | | ||    | ||      | | || |  | |||||||| | ||  |||||||||||||||| |||||||| ||| || | |||||| |||||||| | || |||||||| || ||  |  |||||||  |||| 
gtaaggacaacacaaatgttgaattgcgctcttcttgtctttgggtatgtcttaattgct----tttt----ttcgtttttt-ttctcagGACTCCCACCATTCCTATTCTTCTTTCTACATATGCAAAGCTTCTTATGCACGCTCAACCCCCGGATCCAGAACTGCAAAAAAAAGTTTGGGCTGTATTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34543150|gb|CF511382.1|CF511382
EST:     AGTCCGAAGGAAATTTTTGGCATCATTCATGAGAAGCTCCCTACTGTATC                         GACTTCTACAGTTCCTATTCTTCTTTCAACATATGCTAAGATTTTGATGCA
genomic: AGTCCGAAGGAAATTTTTGGCATCATTCATGAGAAGCTCCCTACTGTATCgtaagagctc ... gtactttcagGACTTCTACAGTTCCTATTCTTCTTTCAACATATGCTAAGATTTTGATGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttatacgttctgcccttcaatcctaggatcttaaaacacatattgtactttcagGACTTCTACAGTTCCTATTCTTCTTTCAACATATGCTAAGATTTTGATGCACACTCAACCCTCAGACCCAGAACTACAGAATCAGATTTGGGCAATATTC
                                              tactttc  CT-rich tract
                               ttaaaacacatatt  TA-rich tract