Sequence
atgc intronic sequence ATGC exonic sequencegtacatttatggttatctacattacacaatttctttgcctcgctcatcacccaataaattttagtttcattcaacaaagtaccaatttcactacacctagaactggaatttaaatttattttttgtttttatttatttttgtagCTTGCAAATCTTCATATGGAATTGAGGCCCCATATTCTTCGAAGAGTTATCAAGGATGTAGAGAAGTCTTTGCCTCCAAAAATTGAACGTATTCTTAGGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: LOC_Os07g46590.1 (Oryza sativa), 3'ss of exon 4
gtacatttatggttatctacattacacaatttctttgcctcgctcatcacccaataaattttagtttcattcaacaaagtaccaatttcactacacctaga-------actggaatttaa-atttattttttgtttttatttatttttgtagCTTGCAAATCTTCATATGGAATTGAGGCCCCATATTCTTCGAAGAGTTATCAAGGATGTAGAGAAGTCTTTGCCTCCAAAAATTGAACGTATTCTTAGGG
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-----------------------------------------------------gtaaatatttttctctttcaa-aatgtact--tttctcttgacctagactattctgtcagcattggacatccataactttgcttgatttatttttatagCTTGCAAATCTTCACAAGGAATTGAGGCCTCATATTCTAAGACGAGTTATAAAAGATGTGGAGAAATCTTTACCTCCGAAAATTGAGCGGATTCTTCGTG
upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GRMZM2G010342_T01 (Zea mays), 3'ss of exon 14
gtacatttatggttatctacattacacaatttctttgcctcgctcatcacccaataaattttagtttcattcaacaaagtacca-atttcactacacctagaactggaatttaaatttattttttgtttt-tatttatttttgtagCTTGCAAATCTTCATATGGAATTGAGGCCCCATATTCTTCGAAGAGTTATCAAGGATGTAGAGAAGTCTTTGCCTCCAAAAATTGAACGTATTCTTAGGG
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--------------------------------------gtagtgttccaaatga-aagctttatatttactgaacatcatataatatgttggttttccgttgattgaaactcataaccataacgtcttttgccggttttcttatagCTTGCGAATCTGCATAAGGAATTGAGGCCTCATATTCTAAGGCGGGTTATAAAAGATGTCGAGAAGTCTTTACCTCCTAAAATTGAACGGATTCTACGTG
upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GRMZM2G141258_T01 (Zea mays), 3'ss of exon 15
gtacatttatggttatctacattacacaatttctttgcctcgctcatcacccaataaattttagtttcattcaacaaagtacca-atttcactacacctagaactggaatttaaatttattttttgtttttatt--tatttttgtagCTTGCAAATCTTCATATGGAATTGAGGCCCCATATTCTTCGAAGAGTTATCAAGGATGTAGAGAAGTCTTTGCCTCCAAAAATTGAACGTATTCTTAGGG
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--------------------------------------gtagtgttccaaataa-aagctttatcttcgctgatcagcatagaatatgttggttttctgttaatcgaaagtcgaaacccataacttcttttgctggttttcttatagCTCGCGAATCTGCATAAGGAATTGAGGCCTCATATTCTACGGCGGGTTATAAAAGATGTTGAGAAGTCTTTACCTCCTAAAATCGAGAGGATTCTACGTG
upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA02G45000.1 (Glycine max), 3'ss of exon 15
gtacatttatggttatctacattacacaatttctttgcctcgctcatcacccaataaattttagtttcattcaacaaagtaccaatttcactacacctagaactggaatttaaatttattttttgtttttatttatttttgtagCTTGCAAATCTTCATATGGAATTGAGGCCCCATATTCTTCGAAGAGTTATCAAGGATGTAGAGAAGTCTTTGCCTCCAAAAATTGAACGTATTCTTAGGG
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----------gtataagt-tgtcatggataccctttacatttttaatctgctccttgattttc-cttgatctagagattctcgaattttg----gctta---ctgtaatttga---tgtgcataaattat-tttatatt---agCTTGCAAATCTGCATATGGAATTGAGACCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCCCCCAAAATTGAACGTATCCTTAGGG
upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA14G03780.1 (Glycine max), 3'ss of exon 15
gtacatttatggttatctacattacacaatttctttgcctcgctcatcacccaataaattttagtttcattcaacaaagtaccaatttcactacacctagaactggaatttaaatttattttttgtttttatttatttttgtagCTTGCAAATCTTCATATGGAATTGAGGCCCCATATTCTTCGAAGAGTTATCAAGGATGTAGAGAAGTCTTTGCCTCCAAAAATTGAACGTATTCTTAGGG
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--gtataagttgtcatggataccttttactttttttctct-gctt----cttgattttccttgatcttaagattctcgacgtctgcctcactgtaatttgatgtgca---taaatta---------ttttattt-------tagCTTGCAAATCTGCATATGGAATTGAGACCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCCCCCAAAATTGAGCGTATCCTTAGGG
upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: AT2G13370.1 (Arabidopsis thaliana), 3'ss of exon 16
gtacatttatggttatctacattacacaatttctttgcctcgctcatcacccaataaattttagtt-tcattcaacaaagtaccaatttcactacacctag--aactggaatttaaatttattttttgtttttatttatttt---tgtagCTTGCAAATCTTCATATGGAATTGAGGCCCCATATTCTTCGAAGAGTTATCAAGGATGTAGAGAAGTCTTTGCCTCCAAAAATTGAACGTATTCTTAGGG
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-----------------------------------------------------gtaaggtttgtccattgcttaatagtatgctgtagtaacgaaatatagttgatttattattcagtcgtccactagcttatacttttttggaatttagCTCGCCAACCTGCATTTAGAATTGAGACCCCATATTCTACGACGAGTGATTAAAGATGTTGAAAAGTCGTTGCCTCCAAAAATCGAGCGTATACTAAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actacacctagaactggaatttaaatttattttttgtttttatttatttttgtagCTTGCAAATCTTCATATGGAATTGAGGCCCCATATTCTTCGAAGAGTTATCAAGGATGTAGAGAAGTCTTTGCCTCCAAAAATTGAACGTATTCTTAGGG
ttttttgtttttattt CT-rich tract
aatttaaatttatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacatttatggttatctacattacacaatttctttgcctcgctcatcacccaataaattttagtttcattcaacaaagtaccaatttcactacacctagaactggaatttaaatttattttttgtttttatttatttttgtagCTTGCAAATCTTCATATGGAATTGAGGCCCCATATTCTTCGAAGAGTTATCAAGGATGTAGAGAAGTCTTTGCCTCCAAAAATTGAACGTATTCTTAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT