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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactattcttgattaagttccttgacatttgaaataaaagagatttgttttttatttttgtcttgaatttcaacagGGTGGTTTGGATGATGGTGGGGCGGCATCTGTAAGAGCCATAATGCATTGGCAGTATCGAACTATATGCCGAGGAAATAATTCAATATTACAAAATCTTT

Basic information

species Vitis vinifera
transcript Vv05s0077g01830.t01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA09G04620.1 (Glycine max), 3'ss of exon 14
-------gtactattcttgattaagttccttgacatttgaaataaaagagatttgttttttat---ttttgtcttgaatttcaa------cagGGTGGTTTGGATGATGGTGGGGCGGCATCTGTAAGAGCCATAATGCATTGGCAGTATCGAACTATATGCCGAGGAAATAATTCAATATTACAAAATCTTT
        || | || ||  || | ||  ||    ||  | |    | | |||  ||||  ||   | ||    ||| ||   |       |||| ||| | |||||| |||| || |||||||| ||||||||||||||||||||||||||||| || ||||||||  | ||||| ||  | || |||||||
gttctgattaattttattcttttatttttttctgtttcaacactgtaaatattgcttttgcatgaatgttagactgatttcttagttatctagGGCGGTCTTGATGATAGTGGTGCAGCATCTGTGAGAGCCATAATGCATTGGCAGTATCGAACCATTTGCCGAGGGCAGAATTCTATCATGCATAATCTTT

upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA15G16270.1 (Glycine max), 3'ss of exon 14
----------gtactattcttg-attaagttccttgacatttgaaataaaagagatttgttttttatttttgtcttgaatttcaacagGGTGGTTTGGATGATGGTGGGGCGGCATCTGTAAGAGCCATAATGCATTGGCAGTATCGAACTATATGCCGAGGAAATAATTCAATATTACAAAATCTTT
           |  |||||||  |||  ||| |   ||  |  | ||          ||  | |||   |  | |   | ||    |||||||| | |||||| | || || ||||| || || |||||||||||||||||||||||||| || ||||| ||  | ||||| || || || |||||||
gttccgattaattttattcttttattctgtttcaacactgtaaatattgcttttgcatgaatgttagactgatttctcagttatctagGGTGGTCTTGATGATAGCGGTGCAGCATCCGTGAGGGCCATAATGCATTGGCAGTATCGAACCATTTGCCGGGGGCAGAATTCTATCTTGCATAATCTTT

upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: AT3G16785.1 (Arabidopsis thaliana), 3'ss of exon 14
gtactattcttgatta---agttccttgacatttgaaataaaagagatttg--------ttttttatttttgtcttgaatttcaacagGGTGGTTTGGATGATGGTGGGGCGGCATCTGTAAGAGCCATAATGCATTGGCAGTATCGAACTATATGCCGAGGAAATAATTCAATATTACAAAATCTTT
    || | | |  ||   |  |   |    ||| |||  |        ||         ||||||        |     |    ||||| ||| | || ||  |||| || |||||||| ||||||||||||||||||||||||||||| |||| | ||||| |||| ||||||||    |||||||
--gttagtttcggctagaaaagtgtattctgtttaaaaagatttgctcctgcaatgcaactttttaaaccaacgtatgtgtctggcagGGAGGTATTGACGACAGTGGTGCAGCATCTGTTAGAGCCATAATGCATTGGCAGTATCGAACCATATACAGAGGACATAACTCAATATTGACTAATCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgacatttgaaataaaagagatttgttttttatttttgtcttgaatttcaacagGGTGGTTTGGATGATGGTGGGGCGGCATCTGTAAGAGCCATAATGCATTGGCAGTATCGAACTATATGCCGAGGAAATAATTCAATATTACAAAATCTTT
 ccttgac  putative branch site (score: 4)
     atttgaaataaaagag  TA-rich tract