Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtggatgattttataatcataaatcctgttgattcgtcgggttcatcattctactcatcacattgatctcagttgactgtgtgaatgtgatgtggcagGAAGGGCAGCATTGGGTAACACCTCAGAAACTTTACATGCCAGATCGCGGAACAAGACACTTGTCAGTGCTATCAAGTATAAGCATTCTGCCCTTCTCAC

Basic information

species Vitis vinifera
transcript Vv05s0020g00560.t01
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26264567|gb|CA815630.1|CA815630
EST:     TTTCCAAAAACAAGATTGGACTCTCTTCTTTATCCAGATCTGCAGATGAG                         GAAGGGCAGCATTGGGTAACACCTCAGAAACTTTACATGCCAGATCGCGGA
genomic: TTTCCAAAAACAAGATTGGACTCTCTTCTTTATCCAGATCTGCAGATGAGgtacgcaatt ... gatgtggcagGAAGGGCAGCATTGGGTAACACCTCAGAAACTTTACATGCCAGATCGCGGA
EST: gi|110372279|gb|EC936432.1|EC936432
EST:     TTTCCAAAAACAAGATTGGACTCTCTTCTTTATCCAGATCTGCAGATGAG                         GAAGGGCAGCATTGGGTAACACCTCAGAAACTTTACATGCCAGATCGCGGA
genomic: TTTCCAAAAACAAGATTGGACTCTCTTCTTTATCCAGATCTGCAGATGAGgtacgcaatt ... gatgtggcagGAAGGGCAGCATTGGGTAACACCTCAGAAACTTTACATGCCAGATCGCGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcattctactcatcacattgatctcagttgactgtgtgaatgtgatgtggcagGAAGGGCAGCATTGGGTAACACCTCAGAAACTTTACATGCCAGATCGCGGAACAAGACACTTGTCAGTGCTATCAAGTATAAGCATTCTGCCCTTCTCAC
                           agttgac  putative branch site (score: 4)