1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tactgcattcatgatataagtttttatttagctgctccttttgacagcaattcaaagtttgaatcttatacctgctcttatgaaactcttgattatgcagGAGAATCTTCAATTCCATGTAATGTATGTGGAACACCTTGCATATTGCGGACTGCCAACACTGAAAATAACAGGGGAAGAAAGTTCTACTCATGTCAATC
species | Vitis vinifera |
transcript | Vv04s0044g01570.t01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CTCGGAATTCCCAGTCTCATCGAACAAATATGCCAAGCG GAGAATCTTCAATTCCATGTAATGTATGTGGAACACCTTGCATATTGCGGAEST: gi|30130583|gb|CB915922.1|CB915922
genomic: CTCGGAATTCTCAGTCTCATCGAACAAATATGCCAAGCGgtacactgct ... gattatgcagGAGAATCTTCAATTCCATGTAATGTATGTGGAACACCTTGCATATTGCGGA
EST: CTCGGAATTCCCAGTCTCATCGAACAAATATGCCAAGCG GAGAATCTTCAATTCCATGTAATGTATGTGGAACACCTTGCATATTGCGGA
genomic: CTCGGAATTCTCAGTCTCATCGAACAAATATGCCAAGCGgtacactgct ... gattatgcagGAGAATCTTCAATTCCATGTAATGTATGTGGAACACCTTGCATATTGCGGA
agcaattcaaagtttgaatcttatacctgctcttatgaaactcttgattatgcagGAGAATCTTCAATTCCATGTAATGTATGTGGAACACCTTGCATATTGCGGACTGCCAACACTGAAAATAACAGGGGAAGAAAGTTCTACTCATGTCAATC
tcttgat putative branch site (score: 4)
aatcttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactgcattcatgatataagtttttatttagctgctccttttgacagcaattcaaagtttgaatcttatacctgctcttatgaaactcttgattatgcagGAGAATCTTCAATTCCATGTAATGTATGTGGAACACCTTGCATATTGCGGACTGCCAACACTGAAAATAACAGGGGAAGAAAGTTCTACTCATGTCAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - gcattca
- - - - - - - - - - - - - - - - tgctcct
- - - - - - - - - - - - - - - - - - - - - - - -caattca