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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattatttttactgaattgcaagtttagatttttcctgttcccccgtgattgtgtgggaaagtaagaaacaatttatgtctttgttttggtgaaattggaatacagGTCAAACTACAGAACTCCACTGCAGGGGCTTTATTTGTGCGGGAGTGGGGCTCATCCTGGGGGTGGTGTGATGGGTGCCCCTGGTCGTAATGCCGCGTCT

Basic information

species Vitis vinifera
transcript Vv04s0023g01780.t01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g01780.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA16G25390.1 (Glycine max), 3'ss of exon 14
gtaa--ttatttttactgaattgcaa---------gtttagatttttcctgttccc--ccgtgattgtgtgggaaagtaagaaacaatttatgtctttgttttggtgaaattggaatacagGTCAAACTACAGAACTCCACTGCAGGGGCTTTATTTGTGCGGGAGTGGGGCTCATCCTGGGGGTGGTGTGATGGGTGCCCCTGGTCGTAATGCCGCGTCT
||||  | | ||   |||  ||| ||         ||||   |||  | | |  |    | | |   ||  |     |        | |||  |   ||||||  |  | |||| |   |||||||||||||  ||||| || |  ||| | || || ||||| |||||||| |||||||| |||||||| ||||| || ||||| |||||||| ||   |
gtaagctaacttgagctggcttggaatataatcttgttttagtttgacatataactgatcataaccatgctgttccttctactgataattacatgaatgttttcattgatttgggacttagGTCAAACTACAAGACTCCGCTTCGAGGGTTATACTTATGCGGAAGTGGGGCACATCCTGGTGGTGGTGTTATGGGAGCACCTGGGCGTAATGCTGCTCGT

upper sequence: Vv04s0023g01780.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA02G06340.1 (Glycine max), 3'ss of exon 14
gtaa--ttatttttactgaattgcaagtttagatttttcctgttcccccgtgattgtgtgggaaagtaagaaacaatttatgtctttg---ttttggtgaaa---ttggaatacagGTCAAACTACAGAACTCCACTGCAGGGGCTTTATTTGTGCGGGAGTGGGGCTCATCCTGGGGGTGGTGTGATGGGTGCCCCTGGTCGTAATGCCGCGTCT
||||  | | ||  ||||  ||| || | ||   ||    | ||          |   ||   |   |  |  |  ||   ||   ||    ||  |||||    ||||||   |||||||||||||  ||||| ||  | ||| | || || ||||| |||||||| |||||||| |||||||| ||||| || ||||| |||||||| ||   |
gtaagctaaattgaactggcttg-aaatataatcttggtttattttttgacatataactgatcata-accatgctgttcccgttactgataattacgtgaatgttttggaacgtagGTCAAACTACAAGACTCCGCTTAAAGGGTTATACTTATGCGGAAGTGGGGCACATCCTGGTGGTGGTGTTATGGGAGCACCTGGACGTAATGCTGCTCGT

upper sequence: Vv04s0023g01780.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: PP1S224_84V6.1 (Physcomitrella patens), 3'ss of exon 16
--------------------------------------------------------------------gtaattatttttactgaattgcaagtttagatttttcct----gttccccc-gtgattgtgtgggaaagtaagaaacaattt---atgtctttgttttggtgaaattggaatacagGTCAAACTACAGAACTCCACTGCAGGGGCTTTATTTGTGCGGGAGTGGGGCTCATCCTGGGGGTGGTGTGATGGGTGCCCCTGGTCGTAATGCCGCGTCT
                                                                    ||   || ||| | |  ||   ||| ||| |||  |       ||||  |  || | ||    | | | ||    | ||| |   |||  | |    ||    | |   |  |||||||    ||  |||| ||| || |||| || ||  |||| ||    || || || ||||||||||| || ||||| ||||||||||||||||| ||   |
gtgagctttactaacattgaagtggttctgtgaaataaattgcaatctattttgtgcaacaagttcttgtgcctactttcatttcata--aagattatattgctgacagacgttcttcaagttaatgaactgaatattattgtagaatatgagatggatattgactgtcacattactatcacagGTCTGGGTATCGAACACCAGTGAAGGGTCTCTACATGTGTGGTGCGGGTGCACACCCTGGGGGTGGGGTTATGGGAGCCCCTGGTCGTAATGCGGCAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtgggaaagtaagaaacaatttatgtctttgttttggtgaaattggaatacagGTCAAACTACAGAACTCCACTGCAGGGGCTTTATTTGTGCGGGAGTGGGGCTCATCCTGGGGGTGGTGTGATGGGTGCCCCTGGTCGTAATGCCGCGTCT
           taagaaacaatttat  TA-rich tract