1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtacttatccgttcagtgacaaatattgcgttgacaattgtttctattcaagccctctgaaatgtgattaatctatgttcttcaaatgttgcacttcctgttttccattcataatgagaagctagaaattaataaccaagtgtttggcagGCTATCGAAATCTGAGACAGGATGTTGAAGAAGGCATCTGCCAGGTGTTGGCTTATATGTGGTTGGAATCAGAGATACATTCAAGCTCTGGTAACAATGT
species | Vitis vinifera |
transcript | Vv04s0023g01040.t01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CGGGACGATCCTGGCTCATGAGATGATGCATGCATGGCTCAAACTGAAAG GCTATCGAAATCTGAGTCAGGATGTTGAAGAAGGCATCTGCCAGGTGTTGGEST: gi|110715090|gb|EE092739.1|EE092739
genomic: CGGGACGATCCTGGCTCACGAGATGATGCATGCATGGCTCAAACTGAAAGgtacttatcc ... tgtttggcagGCTATCGAAATCTGAGACAGGATGTTGAAGAAGGCATCTGCCAGGTGTTGG
EST: CGGGACGATCCTGGCTCATGAGATGATGCATGCATGGCTCAAACTGAAAG GCTATCGAAATCTGAGTCAGGATGTTGAAGAAGGCATCTGCCAGGTGTTGGEST: gi|110397911|gb|EC963898.1|EC963898
genomic: CGGGACGATCCTGGCTCACGAGATGATGCATGCATGGCTCAAACTGAAAGgtacttatcc ... tgtttggcagGCTATCGAAATCTGAGACAGGATGTTGAAGAAGGCATCTGCCAGGTGTTGG
EST: CGGGACGATCCTGGCTCATGAGATGATGCATGCATGGCTCAAACTGAAAG GCTATCGAAATCTGAGTCAGGATGTTGAAGAAGGCATCTGCCAGGTGTTGGEST: gi|30137737|gb|CB923075.1|CB923075
genomic: CGGGACGATCCTGGCTCACGAGATGATGCATGCATGGCTCAAACTGAAAGgtacttatcc ... tgtttggcagGCTATCGAAATCTGAGACAGGATGTTGAAGAAGGCATCTGCCAGGTGTTGG
EST: CGGGACGATCCTGGCTCATGAGATGATGCATGCATGGCTCAAACTGAAAG GCTATCGAAATCTGAGTCAGGATGTTGAAGAAGGCATCTGCCAGGTGTTGGEST: gi|110731744|gb|EE106423.1|EE106423
genomic: CGGGACGATCCTGGCTCACGAGATGATGCATGCATGGCTCAAACTGAAAGgtacttatcc ... tgtttggcagGCTATCGAAATCTGAGACAGGATGTTGAAGAAGGCATCTGCCAGGTGTTGG
EST: CGGGACGATCCTGGCTCATGAGATGATGCATGCATGGCTCAAACTGAAAG GCTATCGAAATCTGAGTCAGGATGTTGAAGAAG-CATCTGCCANGTGTTG
genomic: CGGGACGATCCTGGCTCACGAGATGATGCATGCATGGCTCAAACTGAAAGgtacttatcc ... tgtttggcagGCTATCGAAATCTGAGACAGGATGTTGAAGAAGGCATCTGCCAGGTGTTG
tcctgttttccattcataatgagaagctagaaattaataaccaagtgtttggcagGCTATCGAAATCTGAGACAGGATGTTGAAGAAGGCATCTGCCAGGTGTTGGCTTATATGTGGTTGGAATCAGAGATACATTCAAGCTCTGGTAACAATGT
taataac putative branch site (score: 1)
tagaaattaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttatccgttcagtgacaaatattgcgttgacaattgtttctattcaagccctctgaaatgtgattaatctatgttcttcaaatgttgcacttcctgttttccattcataatgagaagctagaaattaataaccaagtgtttggcagGCTATCGAAATCTGAGACAGGATGTTGAAGAAGGCATCTGCCAGGTGTTGGCTTATATGTGGTTGGAATCAGAGATACATTCAAGCTCTGGTAACAATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT