Sequence
atgc intronic sequence ATGC exonic sequence...ctatgctttcaaataccatgcaacaatgatttcttttgcctacattgtcctttgtagcttctgtaggttggtatgttcttattgtgcttgtgatatgcagACAAAAGTTGAGGCGTCTAGAGGTTGCTTTAATAGAATACCGTGAGTCTCTTGAAGAACGGGGGATCAAAAGCTCTGAGGAAATCGAGAGAAAAGTTGCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g06810.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA08G34030.1 (Glycine max), 3'ss of exon 16
-ctatgctttcaaataccatgcaacaatgatttcttttgcctacattgtcctttgtagcttctgtaggttggtatgttcttattgtgcttgt-gatatgcagACAAAAGTTGAGGCGTCTAGAGGTTGCTTTAATAGAATACCGTGAGTCTCTTGAAGAACGGGGGATCAAAAGCTCTGAGGAAATCGAGAGAAAAGTTGCA
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attatcttttgtggggggtgggggtagtgggagggtacagccagtaaaaggtttata--ttatatctattgtctgtttatgatggagcttaccgatctacagGCAAAAGCTGAGACGCTTAGAGGTTGCTTTAATTGAATACCGTGAGTCTCTTGAAGAGAGGGGAGTTAAAAATTTGGAGGAAATTGAGAAGAAAGTTCAG
upper sequence: Vv04s0008g06810.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA16G15820.1 (Glycine max), 3'ss of exon 12
--ctatgctttcaaataccatgcaacaatgatttcttttgcctacattgtcctttgtagcttctgtaggttggtatgttcttattgtgcttgtgatatgcagACAAAAGTTGAGGCGTCTAGAGGTTGCTTTAATAGAATACCGTGAGTCTCTTGAAGAACGGGGGATCAAAAGCTCTGAGGAAATCGAGAGAAAAGTTGCA
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atccattatcttttttggggggttgggagggtacagccaataaaaggtttatattatatctattgtctgcttatg-gagcttaccatggac-tggtctacagGCAAAAGCTGAGACGCTTGGAGGTTGCTTTAATTGAATACGGTGAGTCTCTTGAAGAGAGGGGAATTAAAAATTTGGAGGAAATTGAGAAGAAAGTTCAG
upper sequence: Vv04s0008g06810.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: AT5G10800.1 (Arabidopsis thaliana), 3'ss of exon 15
ctatgctttcaaataccatgcaacaatgatttcttttgcctacattgtcctttgtagcttctgtaggttggtatgt-tctta-ttgtgcttgtgatat------gcagACAAAAGTTGAGGCGTCTAGAGGTTGCTTTAATAGAATACCGTGAGTCTCTTGAAGAACGGGGGATCAAAAGCTCTGAGGAAATCGAGAGAAAAGTTGCA
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--------ttatagctgaaggtggatttctagcttttgcaaatgtaggtatcagtagctgctccattatgagatgtgccttacttatactttttttttattgctgcagACAAAAGCTTAGACACATAGAGATTGCTTTGATAGAGTATCGAGAATCTCTTGAGGAACAAGGGATGAAAAACTCTGAGGAGATAGAAAGAAAAGTTGCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30304964|gb|CB981758.1|CB981758EST: CAAGCATCCCCTCTCAACCCAGACAGTGGAATGATGGATCNAGAGCATAG ACAAAAAGTTGAG
genomic: CAAGCATCCCCTCTCAACC-AGACAGTGGAATGATGAATGAAGAGCATAGgttgtaatga ... tgatatgcagACAAAA-GTTGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtcctttgtagcttctgtaggttggtatgttcttattgtgcttgtgatatgcagACAAAAGTTGAGGCGTCTAGAGGTTGCTTTAATAGAATACCGTGAGTCTCTTGAAGAACGGGGGATCAAAAGCTCTGAGGAAATCGAGAGAAAAGTTGCA
ttcttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctatgctttcaaataccatgcaacaatgatttcttttgcctacattgtcctttgtagcttctgtaggttggtatgttcttattgtgcttgtgatatgcagACAAAAGTTGAGGCGTCTAGAGGTTGCTTTAATAGAATACCGTGAGTCTCTTGAAGAACGGGGGATCAAAAGCTCTGAGGAAATCGAGAGAAAAGTTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
ctatgct
- - - - - - - -ccatgca
- - - - - - - - - - - - - - - - - - -gcctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcttg