Sequence
atgc intronic sequence ATGC exonic sequence...tttttaattttccttttagtctgtctatatgcttatgtgttggtatgactcctaattgtacttgatgtcgtctcaactttatatatgacttattctgcagACTAGTTACTCGCTACGTACTTTTACTGGACATTCTGCGTCTGTTATGTCGTTGGACTTCCACCCGAATCAAGATGATCTCATCTGCTCTTGTGATGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g04890.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA17G30910.1 (Glycine max), 3'ss of exon 14
tttttaattttccttttagtctgtctatatgcttatgtgttggtatgactcctaattgtacttgatgtcgtctcaactttatatatgacttattctgcagACTAGTTACTCGCTACGTACTTTTACTGGACATTCTGCGTCTGTTATGTCGTTGGACTTCCACCCGAATCAAGATGATCTCATCTGCTCTTGTGATGGAG
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cctatatctctggatttttatggattgtgtgcatgcatgtgtatctgtgttttctttttgttctgctttagctgatactgatatgtaattatgaatgcagCCTGGATATTCGCTTCGTACCTTTACGGGACATTCTTCACCTGTTATGTCACTAGATTTTCACCCTAATAAAGATGATCTTATCTGCTCTTGTGATGCTG
upper sequence: Vv04s0008g04890.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA14G16040.1 (Glycine max), 3'ss of exon 14
tttttaattttccttttagtctgtctatatgct-tatgtgttggtatgactcctaattgtacttgatgtcgt-ctcaactttatatatgacttattctgcagACTAGTTACTCGCTACGTACTTTTACTGGACATTCTGCGTCTGTTATGTCGTTGGACTTCCACCCGAATCAAGATGATCTCATCTGCTCTTGTGATGGAG
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-gtttgcctatatctctggatt-tttatggattgtgtgcatacatgtgtttgtgtgtttttcttcgtgttctgctttagctgatatgtaattaccaatgcagCCTGGATATTCGCTTCGTACCTTCACGGGACATTCTTCATCTGTTATGTCACTAGATTTTCACCCTAATAAAGATGATCTTATCTGCTCTTGTGATGTTG
upper sequence: Vv04s0008g04890.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA04G07460.1 (Glycine max), 3'ss of exon 14
--tttttaattttccttttagtct-gtctatatgcttatgtgttggtatgactcctaattgtacttgatgtcgtctcaactttatatatgacttattctgcagACTAGTTACTCGCTACGTACTTTTACTGGACATTCTGCGTCTGTTATGTCGTTGGACTTCCACCCGAATCAAGATGATCTCATCTGCTCTTGTGATGGAG
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tgtcttgaatggtttgtttgcccttgtctagaagttgatgaattgtgtgcatttctggttttaat--attctgatttaactgaatatataa-ttactatgcagCCTGGTTATTCACTTCGTACTTTCACGGGACATTCAACATCTGTTATGTCACTAGATTTTCATCCAAATAAAGATGACCTCATCTGCTCTTGTGATGGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37189135|gb|CF608484.1|CF608484EST: TTCATTTGACAAAACCGTCAGGGTTTGGGATGCTGACAGT ACTAGTTACTCGCTACGTACTTTTACTGGACATTCTGCGTCTGTTATGTCG
genomic: TTCATTTGACAAAACCGTCAGGGTTTGGGATGCTGACAGTgtcagtggac ... tattctgcagACTAGTTACTCGCTACGTACTTTTACTGGACATTCTGCGTCTGTTATGTCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgactcctaattgtacttgatgtcgtctcaactttatatatgacttattctgcagACTAGTTACTCGCTACGTACTTTTACTGGACATTCTGCGTCTGTTATGTCGTTGGACTTCCACCCGAATCAAGATGATCTCATCTGCTCTTGTGATGGAG
cttattct CT-rich tract
tttatatatgacttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttttaattttccttttagtctgtctatatgcttatgtgttggtatgactcctaattgtacttgatgtcgtctcaactttatatatgacttattctgcagACTAGTTACTCGCTACGTACTTTTACTGGACATTCTGCGTCTGTTATGTCGTTGGACTTCCACCCGAATCAAGATGATCTCATCTGCTCTTGTGATGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - gtgttgg
- - - - - - - - - - - - - - - - - - - - - - - - ctcctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgatg