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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgaccaatttagaacagctgcacttcatgttttctgaccttactcgggacttccattgtaacttttctatacttgttggcagGTCACTGTTATCGTGGATGCTTCAGATGCAGAGGAATTCTCCGAAGTATCAACCAAGCCCCTAAGATCTCTTCCTTATGATTCACCAGGACAAACATTTG

Basic information

species Vitis vinifera
transcript Vv03s0063g02450.t01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA04G01470.1 (Glycine max), 3'ss of exon 15
gtaatgaccaatttagaacagctgcacttcatgttttctgaccttactc-gggacttccattgtaacttttctatacttgttggcagGTCACTGTTATCGTGGATGCTTCAGATGCAGAGGAATTCTCCGAAGTATCAACCAAGCCCCTAAGATCTCTTCCTTATGATTCACCAGGACAAACATTTG
|||||||  | | ||||        | ||    |    | | |  ||||   |   |   |  | | |||||| || |      ||||| | ||| |  |||||||||||||||||||| |||||||| || || |   ||||||| || || |||||||||||||||||||| ||||| || ||||
gtaatgaatattatagatgcttcaaatttttcataaaataatccaactccaaggtctttgtaattatttttctctatt-----acagGTTATTGTGACTGTGGATGCTTCAGATGCAGATGAATTCTCAGAGGTGTTCTCCAAGCCTCTCAGGTCTCTTCCTTATGATTCACCTGGACAGACTTTTG

upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA06G01520.1 (Glycine max), 3'ss of exon 15
gtaatgaccaatttagaacagctgcacttcatgttttctgaccttactcgggacttccattgtaacttttctatacttgttggcagGTCACTGTTATCGTGGATGCTTCAGATGCAGAGGAATTCTCCGAAGTATCAACCAAGCCCCTAAGATCTCTTCCTTATGATTCACCAGGACAAACATTTG
|||||||  | | ||||        | ||  | |    | | |  ||||     |    |||||| | || | | | | ||  ||||| | ||| |  ||||||||||||||||| || |||||||| || || |   ||||||| || || |||||||||||||||||||| ||||| || ||||
gtaatgaatattatagatgcttcaaattttct-taaaataatccaactccaaggtct--ttgtaattatttt-tccctatta-cagGTTATTGTGACTGTGGATGCTTCAGATGCTGATGAATTCTCAGAGGTGTTCTCCAAGCCTCTCAGGTCTCTTCCTTATGATTCACCTGGACAGACTTTTG

upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA12G04820.1 (Glycine max), 3'ss of exon 15
gtaatgaccaatttaga-acagctgcacttcatgttttctgaccttactcgggacttccattgtaacttttctatacttgttggcagGTCACTGTTATCGTGGATGCTTCAGATGCAGAGGAATTCTCCGAAGTATCAACCAAGCCCCTAAGATCTCTTCCTTATGATTCACCAGGACAAACATTTG
||||||||   | | || || |    | |||||  |     |    ||||  |   | |  | ||| ||||     ||   |  ||||| | ||| || |||||||| || || ||||| || ||||| ||||| |   | ||||| || ||||||||||||||||||||||| || ||||||||||
gtaatgacttgtatcgatactgtataatttcatactag--aatgcaactccaggtcttctgtataaatttttc---ctctattccagGTTATTGTGATTGTGGATGCATCGGAAGCAGAAGAGTTCTCTGAAGTGTTCTCAAAGCCTCTCAGATCTCTTCCTTATGATTCACCTGGGCAAACATTTG

upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA11G12610.1 (Glycine max), 3'ss of exon 15
gtaatgaccaatttagaacagctgcacttcatgttttctgaccttactcgggacttccattgtaacttttctatacttgttggcagGTCACTGTTATCGTGGATGCTTCAGATGCAGAGGAATTCTCCGAAGTATCAACCAAGCCCCTAAGATCTCTTCCTTATGATTCACCAGGACAAACATTTG
||||||||   | |  |     |||| ||    |  | | |    ||||  |   | |  | ||| |||||    ||   |  ||||| | ||| || |||||||| || || ||||| || ||||| ||||| |   | ||||| || |||||||||||||||||||| || || ||||||||||
gtaatgacttgtatcaatactttgcaattt-catactataatgcaactccaggtcttctgtataatttttcc---ctctattccagGTTATTGTAATTGTGGATGCATCGGAAGCAGAAGAGTTCTCTGAAGTGTTCTCAAAGCCTCTCAGATCTCTTCCTTATGATTCGCCTGGGCAAACATTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71855416|gb|DT004471.1|DT004471
EST:     TGTTCCAGTACAACTGCACCAATACAATTCCTGAGCAATTGCTGGAAAAC                         GTCACTGTTATCGTGGATGCTTCAGATGCAGAGGAATTCTCCGAAGTATCA
genomic: TGTTCCAGTACAACTGCACCAATACAATTCCTGAGCAATTGCTGGAAAATgtaatgacca ... ttgttggcagGTCACTGTTATCGTGGATGCTTCAGATGCAGAGGAATTCTCCGAAGTATCA
EST: gi|34546253|gb|CF514485.1|CF514485
EST:     CGTTCCAGTACAACTGCACCAATACAATTCCTGAGCAATTGCTGGAAAAC                         GTCACTGTTATCGTGGATGCTTCAGATGCAGAGGAATTCTCCGAAGTATCA
genomic: TGTTCCAGTACAACTGCACCAATACAATTCCTGAGCAATTGCTGGAAAATgtaatgacca ... ttgttggcagGTCACTGTTATCGTGGATGCTTCAGATGCAGAGGAATTCTCCGAAGTATCA
EST: gi|7593709|gb|AW707960.1|AW707960
EST:     TGTTCCAGTACAACTGCACCAATACAATTCCTGAGCAATTGCTGGAAAAC                         GTCACTGTTATCGTGGATGCTTCAGATGCAGAGGAATTCTCCGAAGTATCA
genomic: TGTTCCAGTACAACTGCACCAATACAATTCCTGAGCAATTGCTGGAAAATgtaatgacca ... ttgttggcagGTCACTGTTATCGTGGATGCTTCAGATGCAGAGGAATTCTCCGAAGTATCA
EST: gi|71868042|gb|DT017097.1|DT017097
EST:     TGTTCCAGTACAACTGCACCAATACAATTCCTGAGCAATTGCTGGAAAAC                         GTCACTGTTATCGTGGATGCTTCAGATGCAGAGGAATTCTCCGAAGTATCA
genomic: TGTTCCAGTACAACTGCACCAATACAATTCCTGAGCAATTGCTGGAAAATgtaatgacca ... ttgttggcagGTCACTGTTATCGTGGATGCTTCAGATGCAGAGGAATTCTCCGAAGTATCA
EST: gi|71875737|gb|DT024792.1|DT024792
EST:     TGTTCCAGTACAACTGCACCAATACAATTCCTGAGCAATTGCTGGAAAAC                         GTCACTGTTATCGTGGATGCTTCAGATGCAGAGGAATTCTCCGAAGTATCA
genomic: TGTTCCAGTACAACTGCACCAATACAATTCCTGAGCAATTGCTGGAAAATgtaatgacca ... ttgttggcagGTCACTGTTATCGTGGATGCTTCAGATGCAGAGGAATTCTCCGAAGTATCA
EST: gi|110364003|gb|EC927640.1|EC927640
EST:     GAGCAATTGCTGGAAAAC                         GTCACTGTTATCGTGGATGCTTCAGATGCAGAGGAA-TCTTCCGAAGTATC
genomic: GAGCAATTGCTGGAAAATgtaatgacca ... ttgttggcagGTCACTGTTATCGTGGATGCTTCAGATGCAGAGGAATTC-TCCGAAGTATC
EST: gi|77586149|gb|DV222167.1|DV222167
EST:     TGTTCCAGTACAACTGCACCAATACAATTCCTGAGCAATTGCTGGAAAAC                         GTCACTGTTATCGTGGATGCTTCAGATGCAGAGGAATTCTCCGAAGTATCA
genomic: TGTTCCAGTACAACTGCACCAATACAATTCCTGAGCAATTGCTGGAAAATgtaatgacca ... ttgttggcagGTCACTGTTATCGTGGATGCTTCAGATGCAGAGGAATTCTCCGAAGTATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttctgaccttactcgggacttccattgtaacttttctatacttgttggcagGTCACTGTTATCGTGGATGCTTCAGATGCAGAGGAATTCTCCGAAGTATCAACCAAGCCCCTAAGATCTCTTCCTTATGATTCACCAGGACAAACATTTG
                            ttgtaac  putative branch site (score: 2)
                                   ttttctata  TA-rich tract