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...cctagctcctgcatgcattcacaatgtttttgtataaacaagtaaaatccagtgcaattgccttcataactaacttgaaaaaaaatgttaaatgttgcagCTTCCATTTATGCGGATAGGACTAAGCGTGAAGTTTCAGATGCAGCTGAGAAGCTGGCAAACATGACGGTTGGTTCTGGTAGGAATGGAATGAGGCAATC
species | Vitis vinifera |
transcript | Vv02s0033g01110.t01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GAGCTCTCCTAAGCAGCCAAGATATCGACCACCAGCAAGGAACAGCCCAA CTTCCATTTATGCGGATAGGACTAAGCGTGAAGTTTCAGATGCAGCTGAGAEST: gi|34543467|gb|CF511699.1|CF511699
genomic: GAGCTCTCCTAAGCAGCCAAGATATCGACCACCAGCAAGGAACAGCCCAAgtaagctcct ... aatgttgcagCTTCCATTTATGCGGATAGGACTAAGCGTGAAGTTTCAGATGCAGCTGAGA
EST: GAGCTCTCCTAAGCAGCCAAGATATCGACCACCAGCAAGGAACAGCCCAA CTTCCATTTATGCGGATAGGACTAAGCGTGAAGTTTCAGATGCAGCTGAGAEST: gi|110366174|gb|EC929904.1|EC929904
genomic: GAGCTCTCCTAAGCAGCCAAGATATCGACCACCAGCAAGGAACAGCCCAAgtaagctcct ... aatgttgcagCTTCCATTTATGCGGATAGGACTAAGCGTGAAGTTTCAGATGCAGCTGAGA
EST: GAGCTCTCCTAAGCAGCCAAGATATCGACCACCAGCAAGGAACAGCCCAA CTTCCATTTATGCGGATAGGACTAAGCGTGAAGTTTCAGATGCAGCTGAGAEST: gi|110396778|gb|EC962478.1|EC962478
genomic: GAGCTCTCCTAAGCAGCCAAGATATCGACCACCAGCAAGGAACAGCCCAAgtaagctcct ... aatgttgcagCTTCCATTTATGCGGATAGGACTAAGCGTGAAGTTTCAGATGCAGCTGAGA
EST: GAGCTCTCCTAAGCAGCCAAGATATCGACCACCAGCAAGGAACAGCCCAA CTTCCATTTATGCGGATAGGACTAAGCGTGAAGTTTCAGATGCAGCTGAGA
genomic: GAGCTCTCCTAAGCAGCCAAGATATCGACCACCAGCAAGGAACAGCCCAAgtaagctcct ... aatgttgcagCTTCCATTTATGCGGATAGGACTAAGCGTGAAGTTTCAGATGCAGCTGAGA
aatccagtgcaattgccttcataactaacttgaaaaaaaatgttaaatgttgcagCTTCCATTTATGCGGATAGGACTAAGCGTGAAGTTTCAGATGCAGCTGAGAAGCTGGCAAACATGACGGTTGGTTCTGGTAGGAATGGAATGAGGCAATC
aactaac putative branch site (score: 1)
ataactaacttgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctagctcctgcatgcattcacaatgtttttgtataaacaagtaaaatccagtgcaattgccttcataactaacttgaaaaaaaatgttaaatgttgcagCTTCCATTTATGCGGATAGGACTAAGCGTGAAGTTTCAGATGCAGCTGAGAAGCTGGCAAACATGACGGTTGGTTCTGGTAGGAATGGAATGAGGCAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - tcctgca
- - - - - - - -cattcac
- - - - - - - - - - - - - - - - - taaacaa
- - - - - - - - - - - - - - - - - - - - - -aaaatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa