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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgggcaacatttgcaagaatttccttgaaatatctgcattttgctttccacttattgcacaatgttctattcatgtgattttcagGGATCACCACTCAGGAAGTCTGCTAGTGTTGGTGATTGGATGTTTGATTCTAAACCAATG

Basic information

species Vitis vinifera
transcript Vv02s0025g02480.t01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g02480.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA10G31630.2 (Glycine max), 3'ss of exon 12
gtaagtgggcaacatttgcaagaatttccttgaaatatctgcattttgctttccacttattgcacaatgttctattcatgtgatttt-----cagGGATCACCACTCAGGAAGTCTGCTAGTGTTGGTGATTGGATGTTTGATTCTAAACCAATG
||  || |   |  |     |  |||  ||    |||| |  ||||| |||   |    |      ||||||| ||| | | |  ||      ||||||||||| | ||||| ||||| |||||||||||||||||| | ||||  |||| ||||
gttggttgatgatctaattgattattgtct----atatatttatttttcttcttatccctcatttgatgttctcttccttttacgttaaatatagGGATCACCAATGAGGAAATCTGCGAGTGTTGGTGATTGGATGGTGGATTTCAAACAAATG

upper sequence: Vv02s0025g02480.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA20G35970.2 (Glycine max), 3'ss of exon 12
gtaagtgggcaacatttgcaagaatttccttgaaatatctgcattttgctttccacttattgcacaatgttctattcatgtgatttt-----cagGGATCACCACTCAGGAAGTCTGCTAGTGTTGGTGATTGGATGTTTGATTCTAAACCAATG
|| ||| |   |  |     |  |||  ||    |||| |  || || |     | |  |      || |||| ||| ||| |  ||      ||||||||||| | ||||| ||||| |||||||||||||||||| | ||||  |||| ||||
gttagttgatgatctaattgattattgtct----atatatatatatttccccttattcctcatttgatattctcttcctgttacattaaatatagGGATCACCAATGAGGAAATCTGCGAGTGTTGGTGATTGGATGGTGGATTACAAACAAATG

upper sequence: Vv02s0025g02480.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA20G16510.2 (Glycine max), 3'ss of exon 13
gtaagtgggcaacatttgcaa---gaatttccttgaaatatctgcattttgctttcc---acttattgcacaatgttctatt-catgtgattttcag-
    ||  |     |||  ||   || | |  || |  |||     || |   || |   |  |  ||   |   | | ||  ||| |||| |   |    | |||||||||  |||| ||||| |||||| ||||||||||||| ||||| |||| ||||
----gtttgttgtttttctaatttgattattgtttatgtattcatgttatatatttccctatctgatgtttatgttcccataacatttgatatagGGATCAGTATCACCACTGCGGAAATCTGCCAGTGTTAGTGATTGGATGTTGGATTCCAAACAAATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161710935|gb|FC058203.1|FC058203
EST:     GATATTCCATTATGTGCAGTTGCACCCCGATCCTCTCAG                         GGATCACCACTCAGGAAGTCTGCTAGT
genomic: GATATTCCATTATGTGCAGTTGCACGCCGATCCTCTCAGgtaagtgggc ... tgattttcagGGATCACCACTCAGGAAGTCTGCTAGT
EST: gi|34544637|gb|CF512869.1|CF512869
EST:     GATATTCCATTATGTGCAGTTGCACGCCGATCCTCTCAG                         GGATCACCACTCAGGAAGTCTGCTAGTGTTGGTGATTGGATGTTTGATTCT
genomic: GATATTCCATTATGTGCAGTTGCACGCCGATCCTCTCAGgtaagtgggc ... tgattttcagGGATCACCACTCAGGAAGTCTGCTAGTGTTGGTGATTGGATGTTTGATTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctgcattttgctttccacttattgcacaatgttctattcatgtgattttcagGGATCACCACTCAGGAAGTCTGCTAGTGTTGGTGATTGGATGTTTGATTCTAAACCAATG
                                                ttttc  CT-rich tract
                   acttatt  TA-rich tract