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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgggctttggttttcttgaaattctttttcacaagacagtagcgcattgcagcagcatctcactgtaattttgtgaacagGATGAAGGGGCATTTGCCATTGCTCAAGCACTCAAGGCTAATGAAGATGTGGCAGTCACGTCTCTAAACCTTGCGAGCAACTTCCTCACAAAATTTGGAC

Basic information

species Vitis vinifera
transcript Vv01s0026g00610.t01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0026g00610.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: LOC_Os06g13050.1 (Oryza sativa), 3'ss of exon 16
---------------gtatgg-gctttggttttcttgaaattctttttcacaagacagtagcgcattgcagcagcatc--tcactgtaattttgtgaacagGATGAAGGGGCATTTGCCATTGCTCAAGCACTCAAGGCTAATGAAGATGTGGCAGTCACGTCTCTAAACCTTGCGAGCAACTTCCTCACAAAATTTGGAC
                |   | |  ||  | || ||| | ||  | ||     | |  |   |   | || ||   ||  |  |  | ||  |   |||||||||| || ||||||||  | || |||||||| || |||||||||||| | |||||||| ||  |||| ||||| | ||||||| |||| ||||||||||
gtaagtaaacactaaatgcagtgtctttttctttttgtattttctattggtgggtctatgcagatctccaccatgttcaataccctttatgctcctaacagGATGATGGAGCATTTGCATTGGCACAAGCACTTAAAGCTAATGAAGATCTTGCAGTCACATCATTAAATCTTGCAAACAACTTCTTCACTAAATTTGGAC

upper sequence: Vv01s0026g00610.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA01G04270.1 (Glycine max), 3'ss of exon 12
gtatgggctttggttttcttgaaattctttttcacaagaca-gtagcgcattgcagcagca-tctcactgtaattttgtgaacagGATGAAGGGGCATTTGCCATTGCTCAAGCACTCAAGGCTAATGAAGATGTGGCAGTCACGTCTCTAAACCTTGCGAGCAACTTCCTCACAAAATTTGGAC
|||||    |  ||| | ||| | || |  |||| ||  || | |    ||  || |   | |  ||  ||  | |  |  ||||||||| || || ||||| |||||||||||||||||| ||||||| ||||| || ||||| || |||||| |||| || |||||||| ||||||||||| |
gtatgaatgt--gttcttttgtatttttggttcataacccatggaaattatatcatctctaatgccatagttgtctgattcacagGATGATGGAGCTTTTGCTATTGCTCAAGCACTCAAGTCTAATGATGATGTAGCTGTCACATCACTAAACATTGCCAGTAACTTCCTAACAAAATTTGGGC

upper sequence: Vv01s0026g00610.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA02G03410.1 (Glycine max), 3'ss of exon 14
gtatgggctttggttttcttgaaattctttttcacaagaca-gtagcgcattgcagcagca-tctcactgtaattttgtgaacagGATGAAGGGGCATTTGCCATTGCTCAAGCACTCAAGGCTAATGAAGATGTGGCAGTCACGTCTCTAAACCTTGCGAGCAACTTCCTCACAAAATTTGGAC
|||||   | || | || ||  | || |  |||| ||  || | |    ||  || |   | |  ||  ||  |    |  ||||||||| || || ||||| |||||||||||||||||| ||||||| ||||| || ||||| || |||||| |||  || |||||||| ||||||||||| |
gtatgaa-tgtgttctttttttatttttgattcataactcatggaaattatatcatctctaatgccatagttgtccgattcacagGATGATGGAGCTTTTGCTATTGCTCAAGCACTCAAGTCTAATGATGATGTAGCTGTCACATCCCTAAACATTGGCAGTAACTTCCTAACAAAATTTGGGC

upper sequence: Vv01s0026g00610.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: AT1G10510.1 (Arabidopsis thaliana), 3'ss of exon 16
-----gtatgggctttggttttcttga-aattctttttcacaagacagtagcgcattgcagcagcatctcactgt--aattttgtgaacagGATGAAGGGGCATTTGCCATTGCTCAAGCACTCAAGGCTAATGAAGATGTGGCAGTCACGTCTCTAAACCTTGCGAGCAACTTCCTCACAAAATTTGGAC
       |   ||  |  ||   ||   ||| || | ||       |  |       ||||    |||| | | |      |  |    ||||||| || ||||| ||||||||||||||| | ||||| |||||||||||  |||| || ||  ||||||||| || ||||||| |||| || |||||||
gtaaaaaaaaagcgctacttcgtttatcaatactgtgtcttcttttaagacttgtaagcaggtcaatcttattattttgcctcatttgtagGATGATGGAGCATTCGCCATTGCTCAAGCATTGAAGGCCAATGAAGATGTCACAGTTACATCGATAAACCTTGGGAACAACTTCATCACCAAGTTTGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcacaagacagtagcgcattgcagcagcatctcactgtaattttgtgaacagGATGAAGGGGCATTTGCCATTGCTCAAGCACTCAAGGCTAATGAAGATGTGGCAGTCACGTCTCTAAACCTTGCGAGCAACTTCCTCACAAAATTTGGAC
                               atctcac  putative branch site (score: 3)
                                      tgtaatttt  TA-rich tract