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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagccaaagtatttaacacttgtgcatgaaaagcttgaaaacatgtattcccttgcatgcaaatgtttttttccattgtttgtgactagcattgttgtttgtagTTGAACCGTTTGGTGACAGAAAGGTGGGTTGATGGTTGGGATGACCCTCGTCTTATGACATTAGCTGGTTTACGACGTAGAGGGGTGACTTCGACCTCCA

Basic information

species Vitis vinifera
transcript Vv01s0011g03740.t01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: LOC_Os01g09000.1 (Oryza sativa), 3'ss of exon 14
gtgagccaaagtatttaacacttgtgcatgaaaagcttga--aaacatgtattcccttgcatgcaaatgtttttttccattgtttgtgactagcattgttgtttgtagTTGAACCGTTTGGTGACAGAAAGGTGGGTTGATGGTTGGGATGACCCTCGTCTTATGACATTAGCTGGTTTACGACGTAGAGGGGTGACTTCGACCTCCA
                     | ||   ||||    ||||  | | |  | || |  ||| | ||  | |  |||   |    |  ||  |    || |   ||| ||||||| ||  | |||||||||| |||||| ||||| ||||||||||||||| |  ||||| |||| || || || ||  | || ||| | || ||  | |
--------------------gtggttactgaatcttttgacaagataaatgttacactgctt-catctatggtttaagaacactcatggtttttgttctg--ttgcagTTGAATCGACTTGTGACAGAAAAGTGGGTAGATGGGTGGGATGACCCTCGTTTGTTGACACTAGCAGGATTGCGGCGACGTGGAGTGTCATCAACTGCAA

upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA10G41920.2 (Glycine max), 3'ss of exon 15
gtgagccaaagtatttaacacttgtgcatgaaaagcttgaaaacatgtattcccttgcatgcaaatgtttttttccattgtttgtgactagcattgttgtttgtagTTGAACCGTTTGGTGACAGAAAGGTGGGTTGATGGTTGGGATGACCCTCGTCTTATGACATTAGCTGGTTTACGACGTAGAGGGGTGACTTCGACCTCCA
||||  |||   ||||  |||   || |   | |  |||   |  | ||||    ||| | ||| |     || ||  |   |     ||  ||| ||  ||  || | || ||| | || ||||| | |||||||||||| |||||||| |||||| | |||||| |||||||||| || ||||||||  ||||| | ||  | |
gtgaagcaaca-attttgcaca-atgta---ataatttgttgagttctattattatgcttacaatttgccattccc--taactaca--tattattctttgttaaagCTAAATCGTCTAGTTACAGAGAAGTGGGTTGATGGGTGGGATGATCCTCGTTTGATGACACTAGCTGGTTTGCGGCGTAGAGGCATGACTCCAACTGCAA

upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA20G25120.1 (Glycine max), 3'ss of exon 15
gtgagccaaagtatttaacacttgtgcatgaaaagcttgaaaacatgtattcccttgcatgcaaatgtttttttccattgtttgtgactagcattgttgtttgtagTTGAACCGTTTGGTGACAGAAAGGTGGGTTGATGGTTGGGATGACCCTCGTCTTATGACATTAGCTGGTTTACGACGTAGAGGGGTGACTTCGACCTCCA
||||  |||   ||||  |||   || |   | |  |||   |  | ||||    ||| |   | |     || ||  |   |     ||  ||| ||  ||  || | || ||| | || ||||| | |||||||||||| |||||||| |||||| | |||||| |||||||||| || ||||||||  ||||  | ||  | |
gtgaagcaaca-attttgcaca-atgta---ataatttgttgagttctattattatgcttatgatttgccattccc--taactaca--tattattctttgttaaagCTAAATCGTCTAGTTACAGAGAAGTGGGTTGATGGGTGGGATGATCCTCGTTTGATGACACTAGCTGGTTTGCGGCGTAGAGGCATGACCCCAACTGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccttgcatgcaaatgtttttttccattgtttgtgactagcattgttgtttgtagTTGAACCGTTTGGTGACAGAAAGGTGGGTTGATGGTTGGGATGACCCTCGTCTTATGACATTAGCTGGTTTACGACGTAGAGGGGTGACTTCGACCTCCA
           aaatgttttttt  TA-rich tract