Sequence
atgc intronic sequence ATGC exonic sequence...gcttgtgtgtgtttacagagatcatactctggttccacccttgagttacattaccaaaattgtttactcgtccttgatgttgtatcttgtgtttccacagGTGGGGAAGGTGGCTGATCTTGTTCTCTGGAATCCATCTTTCTTTGGGGCAAAACCAGAAATGGTGATAAAAGGTGGTGTAATTGCATGGGCTAACATGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: 13114.m00152 (Oryza sativa), 3'ss of exon 4
------gcttgtgtgtgtttacagagatcatactctggttccacccttgagttacattaccaaaattgtttactcgtccttgatgttgtatcttgtgtttccacagGTGGGGAAGGTGGCTGATCTTGTTCTCTGGAATCCATCTTTCTTTGGGGCAAAACCAGAAATGGTGATAAAAGGTGGTGTAATTGCATGGGCTAACATGG
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tttcctactggattttcttaactgaaagggaa----aaacttgctaactgatcatacttctctt-tagtttttctattcataattttttggttttttttttt-cagGTGGGAAAATTAGCTGACCTTGTTATTTGGAAACCTTCTTTCTTTGGAGCAAAACCAGAAATGGTTATAAAGGGTGGTGCTATTGCATGCGCTAATATGG
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GRMZM2G461569_T01 (Zea mays), 3'ss of exon 15
gcttgtgtgtgtttacagagatcatactctggtt-ccacccttgagttacatta--ccaaaattgtttactcgtccttgatgttgtatcttgtgtttccacagGTGGGGAAGGTGGCTGATCTTGTTCTCTGGAATCCATCTTTCTTTGGGGCAAAACCAGAAATGGTGATAAAAGGTGGTGTAATTGCATGGGCTAACATGG
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--ccgtatgtcatgacattga-cacccagtgattgctggctaagcgtttcctctattcgtatctcaatccaaggtctaactgaagctacacaatttttgacagGTGGGAAAATTAGCTGACCTTGTTCTTTGGAAACCATCTTTCTTCGGCGCTAAACCAGAACTGGTTGTAAAGGGAGGTGCAATTGCATGGGCTAACATGG
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA05G27840.1 (Glycine max), 3'ss of exon 15
gcttgtgtgtgtttacagagatcatactctggttccacccttgag--ttacattaccaaaattgtt-tactcgtccttgatgttgtatcttgtgtttccacagGTGGGGAAGGTGGCTGATCTTGTTCTCTGGAATCCATCTTTCTTTGGGGCAAAACCAGAAATGGTGATAAAAGGTGGTGTAATTGCATGGGCTAACATGG
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-caaacttaacatatcagaggaca-gctataaatctgactctaaaccttgtaattttagcattatcatccagatcgctgcatttatgtgcc-taactttgcagGTGGGAAAGTTAGCTGATCTTGTGATGTGGAAGCCATCTTTTTTTGGGGCAAAACCAGAAATGGTGATCAAAGGTGGGGTGGTTGCATGGGCTGATATGG
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA11G37250.1 (Glycine max), 3'ss of exon 16
gcttgtgtgtgtttacagagatcatactctggttccacccttgagtt-acattaccaaaattgtttactcgtccttgatgttgtatcttg---tgtttccacagGTGGGGAAGGTGGCTGATCTTGTTCTCTGGAATCCATCTTTCTTTGGGGCAAAACCAGAAATGGTGATAAAAGGTGGTGTAATTGCATGGGCTAACATGG
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--ctccccataatcattaacctcaatttacatatcaaattggcagctgatccttctaatattagta--tcatcttgaccccctcatttagacctagttttgcagGCGGGTAAGTTGGCTGATCTTGTATTATGGAAGCCGTCATTTTTTGGAGCAAAACCAGAAATGGTGATCAAAGGTGGTGAGGTTGCATATGCTAACATGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122688779|gb|EC925600.1|EC925600EST: TAAATCCTGCAATAGCTAATGGGTTTTCACGATTTGTTGGCTCCATTGAG GTGGGGAAGGTGGCTGATCTTGTTCTCTGGAATCCATCTTTCTTTGGGGCA
genomic: TAAATCCTGCAATAGCTAATGGGTTTTCACGATTTGTTGGCTCCATTGAGgtattttagc ... gtttccacagGTGGGGAAGGTGGCTGATCTTGTTCTCTGGAATCCATCTTTCTTTGGGGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttacattaccaaaattgtttactcgtccttgatgttgtatcttgtgtttccacagGTGGGGAAGGTGGCTGATCTTGTTCTCTGGAATCCATCTTTCTTTGGGGCAAAACCAGAAATGGTGATAAAAGGTGGTGTAATTGCATGGGCTAACATGG
ccttgat putative branch site (score: 5)
tgtttcc putative PPT
aaaattgttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcttgtgtgtgtttacagagatcatactctggttccacccttgagttacattaccaaaattgtttactcgtccttgatgttgtatcttgtgtttccacagGTGGGGAAGGTGGCTGATCTTGTTCTCTGGAATCCATCTTTCTTTGGGGCAAAACCAGAAATGGTGATAAAAGGTGGTGTAATTGCATGGGCTAACATGG
gcttgtg
- - - - - - - acagaga
- - - - - - - - - - - catactc
- - - - - - - - - - - - - - - - - -caccctt
- - - - - - - - - - - - - - - - - - - - - - - - - -taccaaa