1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtgttatatctagatgtgcttatgcttgaattccttttgatgctagattgaaacttcttagttgtttattaacttcaatatctggtgcccagGGTGATACACCACAGGAAAAGCGATTGAAGTTGGGCAGTCCAGCAGTAGAGGCCAAAGGAAAGGATAAGATGTCAAAGAATATTGATGCAGTGGACAATG
species | Vitis vinifera |
transcript | Vv00s0229g00110.t01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AATGGATTGAATGGTCAAGTTCAAGAGAAAATGACCACACTGTCCATGAG GGTGATACACCACAGGAAAAGCGATTGAAGTTGGGCAGTCCAGCAGTAGAGEST: gi|294966464|gb|GW839571.1|GW839571
genomic: AATGGATTGAATGGTCAAGTTCAAGAGAAAATGACCACACTGTCCATGAGgtgttatatc ... tggtgcccagGGTGATACACCACAGGAAAAGCGATTGAAGTTGGGCAGTCCAGCAGTAGAG
EST: AATGGATTGAATGGTCAAGTTCAAGAGAAAATGACCACACTGTCCATGAG GGTGATACACCACAGGAAAAGCGATTGAAGTTGGGCAGTCCAGCAGTAGAGEST: gi|34542799|gb|CF511031.1|CF511031
genomic: AATGGATTGAATGGTCAAGTTCAAGAGAAAATGACCACACTGTCCATGAGgtgttatatc ... tggtgcccagGGTGATACACCACAGGAAAAGCGATTGAAGTTGGGCAGTCCAGCAGTAGAG
EST: AATGGATTGAATGGTCAAGTTCAAGAGAAAATGACCACACTGTCCATGAG GGTGATACACCACAGGAAAAGCGATTGAAGTTGGGCAGTCCAGCAGTAGAGEST: gi|110691518|gb|EE069708.1|EE069708
genomic: AATGGATTGAATGGTCAAGTTCAAGAGAAAATGACCACACTGTCCATGAGgtgttatatc ... tggtgcccagGGTGATACACCACAGGAAAAGCGATTGAAGTTGGGCAGTCCAGCAGTAGAG
EST: AATGGATTGAATGGTCAAGTTCAAGAGAAAATGACCACACTGTCCATGAG GGTGATACACCACAGGAAAAGCGATTGAAGTTGGGCAGTCCAGCAGTAGAGEST: gi|34542883|gb|CF511115.1|CF511115
genomic: AATGGATTGAATGGTCAAGTTCAAGAGAAAATGACCACACTGTCCATGAGgtgttatatc ... tggtgcccagGGTGATACACCACAGGAAAAGCGATTGAAGTTGGGCAGTCCAGCAGTAGAG
EST: AATGGATTGAATGGTCAAGTTCAAGAGAAAATGACCACACTGTCCATGAG GGTGATACACCACAGGAAAAGCGATTGAAGTTGGGCAGTCCAGCAGTAGAGEST: gi|110713658|gb|EE089772.1|EE089772
genomic: AATGGATTGAATGGTCAAGTTCAAGAGAAAATGACCACACTGTCCATGAGgtgttatatc ... tggtgcccagGGTGATACACCACAGGAAAAGCGATTGAAGTTGGGCAGTCCAGCAGTAGAG
EST: AATGGATTGNATGGTCAAGTTCAAGAGAAAATGACCACACTGTCCATGAG GGTGATACACCACAGGAAAAGCGATTGAAGTTGGGCAGTCCAGCAGTAGAG
genomic: AATGGATTGAATGGTCAAGTTCAAGAGAAAATGACCACACTGTCCATGAGgtgttatatc ... tggtgcccagGGTGATACACCACAGGAAAAGCGATTGAAGTTGGGCAGTCCAGCAGTAGAG
tgatgctagattgaaacttcttagttgtttattaacttcaatatctggtgcccagGGTGATACACCACAGGAAAAGCGATTGAAGTTGGGCAGTCCAGCAGTAGAGGCCAAAGGAAAGGATAAGATGTCAAAGAATATTGATGCAGTGGACAATG
tattaac putative branch site (score: 1)
tttattaacttcaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttatatctagatgtgcttatgcttgaattccttttgatgctagattgaaacttcttagttgtttattaacttcaatatctggtgcccagGGTGATACACCACAGGAAAAGCGATTGAAGTTGGGCAGTCCAGCAGTAGAGGCCAAAGGAAAGGATAAGATGTCAAAGAATATTGATGCAGTGGACAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA