Skip to another splice site:
1
5'  3'    2
5'  3'    3
5'  3'    4
5'  3'    5
5'  3'    6
5'  3'    7
5'  3'    8
5'  3'    9
5'  3'    10
5'  3'    11
5'  3'    12
5'  3'    13
5'  3'    14
5'  3'    15
5'  3'

Data associated with selected splice site

General
EST
PPT, BS, UA-tract
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

...ccttctattctgctgcttgcaaagcatgtgatgaaatatttctcattccaatttactattctttttatttgagtgctgattatttagttgtgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAGGGATGATGCATCTGTGAGCTATAGATCAACAACGCAGATGAAGATCTTT

Basic information

species	Vitis vinifera
transcript	Vv00s0211g00120.t01
intron #	15
splice site	3'
intron type	U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|352781461|gb|FQ468305.1|FQ468305

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|352781319|gb|FQ467765.1|FQ467765

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|110709476|gb|EE084971.1|EE084971

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|352768597|gb|FQ467809.1|FQ467809

EST:     CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATAACAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
genomic: CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGT-AGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA

EST: gi|110363542|gb|EC927137.1|EC927137

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|110363542|gb|EC927137.1|EC927137

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|110363542|gb|EC927137.1|EC927137

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|110363542|gb|EC927137.1|EC927137

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|110363542|gb|EC927137.1|EC927137

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|33407197|gb|CF212824.1|CF212824

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|33407197|gb|CF212824.1|CF212824

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|33407197|gb|CF212824.1|CF212824

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|33407197|gb|CF212824.1|CF212824

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|33407197|gb|CF212824.1|CF212824

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|349827018|gb|FQ419109.1|FQ419109

EST:     CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATAACAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
genomic: CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGT-AGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA

EST: gi|29785535|gb|CB342622.2|CB342622

EST:     CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATAACAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
genomic: CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGT-AGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA

EST: gi|352769659|gb|FQ468587.1|FQ468587

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|352780960|gb|FQ466273.1|FQ466273

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|110361521|gb|EC925002.1|EC925002

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|30299391|gb|CB976185.1|CB976185

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|30299391|gb|CB976185.1|CB976185

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|30299391|gb|CB976185.1|CB976185

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|30299391|gb|CB976185.1|CB976185

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|30299391|gb|CB976185.1|CB976185

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|352763948|gb|FQ465398.1|FQ465398

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|352769305|gb|FQ471454.1|FQ471454

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|352777762|gb|FQ466815.1|FQ466815

EST:     CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATAACAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
genomic: CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGT-AGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA

EST: gi|110379633|gb|EC944843.1|EC944843

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|29784993|gb|CB341601.2|CB341601

EST:     CCAACAATTGGATTTGAGAAAGGATCCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGATCAA-TGATGATCCAAGTAAATGCAAGTGAAGGA
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGC-CAAATGATGTTCCAAGTAAATGCAAGTGAAGGA

EST: gi|27578509|gb|CB001204.1|CB001204

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|32250249|gb|CD716068.1|CD716068

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|110383823|gb|EC948224.1|EC948224

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|351030429|gb|FQ432367.1|FQ432367

EST:     CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATAACAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
genomic: CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGT-AGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA

EST: gi|352781813|gb|FQ469111.1|FQ469111

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|352780984|gb|FQ466297.1|FQ466297

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|352780984|gb|FQ466297.1|FQ466297

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|352780984|gb|FQ466297.1|FQ466297

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|352780984|gb|FQ466297.1|FQ466297

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|352780984|gb|FQ466297.1|FQ466297

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|30133417|gb|CB918756.1|CB918756

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|30133417|gb|CB918756.1|CB918756

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|30133417|gb|CB918756.1|CB918756

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|30133417|gb|CB918756.1|CB918756

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|30133417|gb|CB918756.1|CB918756

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|18458459|gb|BM436737.1|BM436737

EST:     CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|30126288|gb|CB911627.1|CB911627

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|30126288|gb|CB911627.1|CB911627

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|30126288|gb|CB911627.1|CB911627

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|30126288|gb|CB911627.1|CB911627

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|30126288|gb|CB911627.1|CB911627

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|27585840|gb|CB008535.1|CB008535

EST:     AATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: AATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|45771466|gb|CN007318.1|CN007318

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|110361068|gb|EC924521.1|EC924521

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|83275764|gb|DV939772.1|DV939772

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|352773362|gb|FQ470949.1|FQ470949

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|352777748|gb|FQ466801.1|FQ466801

EST:     CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATAACAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
genomic: CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGT-AGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA

EST: gi|352768238|gb|FQ469413.1|FQ469413

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|46911083|gb|CN546458.1|CN546458

EST:     CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATAACAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
genomic: CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGT-AGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA

EST: gi|33407112|gb|CF212739.1|CF212739

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|33407112|gb|CF212739.1|CF212739

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|33407112|gb|CF212739.1|CF212739

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|33407112|gb|CF212739.1|CF212739

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|33407112|gb|CF212739.1|CF212739

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|352768986|gb|FQ468177.1|FQ468177

EST:     CCAACAATTGGATTTGAGAAAGAAACCCTGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|37187031|gb|CF606384.1|CF606384

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAA--T--                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|110363609|gb|EC927210.1|EC927210

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|110413717|gb|EC979522.1|EC979522

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|352765218|gb|FQ465915.1|FQ465915

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|352774202|gb|FQ474725.1|FQ474725

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|32461134|gb|CD802308.1|CD802308

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGGACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|352781311|gb|FQ467757.1|FQ467757

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|352767846|gb|FQ466055.1|FQ466055

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|32246995|gb|CD712814.1|CD712814

EST:     CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATAACAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
genomic: CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGT-AGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA

EST: gi|352776557|gb|FQ474859.1|FQ474859

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|352776557|gb|FQ474859.1|FQ474859

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|352776557|gb|FQ474859.1|FQ474859

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|352776557|gb|FQ474859.1|FQ474859

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|352776557|gb|FQ474859.1|FQ474859

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|352782190|gb|FQ470092.1|FQ470092

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|29785493|gb|CB342547.2|CB342547

EST:     CAACAATTGGATTTGAGATCNAAACCATGAAGTACAAGAACTAATAACAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCA-GATCGATC
genomic: CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGT-AGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAG-T-GAAG

EST: gi|352773661|gb|FQ472443.1|FQ472443

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|352772663|gb|FQ472138.1|FQ472138

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|352769248|gb|FQ471397.1|FQ471397

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|352772602|gb|FQ472077.1|FQ472077

EST:     CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATAACAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
genomic: CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGT-AGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA

EST: gi|29785469|gb|CB342488.2|CB342488

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

EST: gi|351013925|gb|FQ434077.1|FQ434077

EST:     CAACAATTGGATTTGAGAAAGAAACCATGAAATACAAGAACTAATAACAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAAGA
genomic: CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGT-AGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA

EST: gi|30299312|gb|CB976106.1|CB976106

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|30299312|gb|CB976106.1|CB976106

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|30299312|gb|CB976106.1|CB976106

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|30299312|gb|CB976106.1|CB976106

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|30299312|gb|CB976106.1|CB976106

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-

EST: gi|352768543|gb|FQ467499.1|FQ467499

EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

ttccaatttactattctttttatttgagtgctgattatttagttgtgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAGGGATGATGCATCTGTGAGCTATAGATCAACAACGCAGATGAAGATCTTT

                            tgctgat  putative branch site (score: 3)
     atttactattcttttt  TA-rich tract

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ccttctattctgctgcttgcaaagcatgtgatgaaatatttctcattccaatttactattctttttatttgagtgctgattatttagttgtgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAGGGATGATGCATCTGTGAGCTATAGATCAACAACGCAGATGAAGATCTTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA