Sequence
atgc intronic sequence ATGC exonic sequencegtattacttgttcttctactcttgttatcaatatagatattttatgttgtgtttcttggatcagGATCCTCGTGACTATTTTGATTCCCAACAAGCGAATGCATTAAAAACTTTGGGAGACACCCTAGCCGGATCAAAGCAAATAAAATGCAGCCTGAGCACCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0015g01390.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: LOC_Os08g25060.1 (Oryza sativa), 3'ss of exon 14
---------------------------gtattacttgttcttc-tactcttgttatcaatatagatattttatgttgtgtttcttggatcagGATCCTCGTGACTATTTTGATTCCCAACAAGCGAATGCATTAAAAACTTTGGGAGACACCCTAGCCGGATCAAAGCAAATAAAATGCAGCCTGAGCACCC
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gtaaaaaatatttcatggcttcatcgtagatcgatgaatcggaataatatattttaacttgtagat-tatcatctcttatttgtcttattagGATCCTCGAGAATATTTTGATTCCCAACAAGCAAATGCTCTGAGATCTTTAGGTGGCAACAATGATGGAAGACATGCTCGTAATTGCAGGCTGAGTACAG
upper sequence: Vv19s0015g01390.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA10G33660.1 (Glycine max), 3'ss of exon 14
--------------------------------gtattacttgttcttctactcttgttatcaatatag----ata--ttttatgttgtgtttcttggatcagGATCCTCGTGACTATTTTGATTCCCAACAAGCGAATGCATTAAAAACTTTGGGAGACACCCTAGCCGGATCAAAGCAAATAAAATGCAGCCTGAGCACCC
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aatagaaaacccatataaaatttattaaataataattaattgtattttgggataaaatatctatttagtgttatgacttttatatt-tgtttcttg-atcagGATCCTCGTGACTATTTTGATTCCCAACAAGCTAATGCTGTAAAAACATTGGATGATTCCCAAGCTGGAATGGAGCAAATGAAATGCAGTTTGGGTTCTG
upper sequence: Vv19s0015g01390.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA20G33940.1 (Glycine max), 3'ss of exon 14
--------------------------------gtattacttgttcttctactcttgttatcaatatag----atattttatgt-tgtgtttcttggatcagGATCCTCGTGACTATTTTGATTCCCAACAAGCGAATGCATTAAAAACTTTGGGAGACACCCTAGCCGGATCAAAGCAAATAAAATGCAGCCTGAGCACCC
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aatagaaaacccatataaaatttattaaataataattaattgtcttttgggataaaacatctatgaagtgttatgacttctatatttgtttcttg-atcagGATCCTCGTGACTATTTTGATTTCCAACAAGCTAATGCTGTAAAAACTTTGGATGATTCTCAAACTGGAATGGAGCAAATGAAATGCAGTTTGGGTTCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71874496|gb|DT023551.1|DT023551EST: TTCAGGCACCTCGTGACCTTCCATTTGCAGCACTTTGCATTAAG GATCCTCGTGACTATTTTGATTCCCAACAAGCGAATGCATTAAAAACTTTG
genomic: TTCAGGCACCTCGTGACCTTCCATTTGCAGCACTTTGCATTAAGgtattacttg ... cttggatcagGATCCTCGTGACTATTTTGATTCCCAACAAGCGAATGCATTAAAAACTTTG
EST:
gi|33403116|gb|CF208743.1|CF208743EST: AGGATCTTCAGGCACCTCGTGACCTTCCATTTGCAGCACTTTGCATTAAG GATCCTCGTGACTATTTTGATTCCCAACAAGCGAATGCATTAAAAACTTTG
genomic: AGGATCTTCAGGCACCTCGTGACCTTCCATTTGCAGCACTTTGCATTAAGgtattacttg ... cttggatcagGATCCTCGTGACTATTTTGATTCCCAACAAGCGAATGCATTAAAAACTTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttcttctactcttgttatcaatatagatattttatgttgtgtttcttggatcagGATCCTCGTGACTATTTTGATTCCCAACAAGCGAATGCATTAAAAACTTTGGGAGACACCCTAGCCGGATCAAAGCAAATAAAATGCAGCCTGAGCACCC
tgtttctt CT-rich tract
ttgttatcaatataga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattacttgttcttctactcttgttatcaatatagatattttatgttgtgtttcttggatcagGATCCTCGTGACTATTTTGATTCCCAACAAGCGAATGCATTAAAAACTTTGGGAGACACCCTAGCCGGATCAAAGCAAATAAAATGCAGCCTGAGCACCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA