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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcaatcttgtaaaactctcagattatcttacaattattctcattttgctgcaccatatagtcatgtgtaaatggtactttgttttgtaagGTTGGAACTAGAGCTGATGCTGCAAAGAGGAGTAAAATTTGAGATCGAAGCATTGTCTGTGCATTCACTTTCCTTTTTGTCCGAAAATTATATACCATCC

Basic information

species Vitis vinifera
transcript Vv19s0015g00280.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g00280.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA02G46920.1 (Glycine max), 3'ss of exon 14
gttcaatcttgtaaaactctcagattatcttacaattattctcattttgctgcaccatatagtcatgtgtaaatggtactttgttttgtaagGTTGGAACTAGAGCTGATGCTGCAAAGAGGAGTAAAATTTGAGATCGAAGCATTGTCTGTGCATTCACTTTCCTTTTTGTCCGAAAATTATATACCATCC
||    | |  || |  |  || |  || || |  ||  |   | |    || |  ||    |  ||||||  |  |  |||||| || ||||||||| ||| || |||| ||||||||||||||||| |||||||| ||||| || ||||||||  ||||||| || ||||| ||   ||| |||||||| 
gtattgt-tcatatacattccaaaacatttttctttttgttcaactggattgga--attgtatgctgtgtatcttattgtttgttatg-aagGTTGGAGCTACAGTTGATTCTGCAAAGAGGAGTAAAGTTTGAGATTGAAGCCTTATCTGTGCACGCACTTTCATTCTTGTCAGAGTCTTACATACCATCT

upper sequence: Vv19s0015g00280.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AT3G13170.1 (Arabidopsis thaliana), 3'ss of exon 14
gttcaatcttgtaaaactctcagattatcttacaattat-tctcattttgctg-caccatatagtcatgtgtaaatggtactttgttttgtaagGTTGGAACTAGAGCTGATGCTGCAAAGAGGAGTAAAATTTGAGATCGAAGCATTGTCTGTGCATTCACTTTCCTTTTTGTCCGAAAATTATATACCATCC
      | |   |||  || | || | | ||| | |||  | |||      || ||  |  ||||| ||   |||  |   || ||  | ||||||||||||| ||   |||| || ||||||| || || ||||||||||||||| | || || || ||||| ||||||||||| ||    ||||| || || 
-----gtatgaaaaacttccctgacttttttatatttacatttcaaccaaatgacaaaaactagtcttgatcaaaacgattttggtcgtctaagGTTGGAACTTGAAACGATGTTGAAAAGAGGGGTCAAGTTTGAGATCGAAGCACTCTCAGTTCACTCACTGTCCTTTTTGTCAGAGGTATATATTCCTTCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctcattttgctgcaccatatagtcatgtgtaaatggtactttgttttgtaagGTTGGAACTAGAGCTGATGCTGCAAAGAGGAGTAAAATTTGAGATCGAAGCATTGTCTGTGCATTCACTTTCCTTTTTGTCCGAAAATTATATACCATCC
                                         ctttgtttt  CT-rich tract
                                          tttgtttt  TA-rich tract