Sequence
atgc intronic sequence ATGC exonic sequencegtatttgagaaacactgatacaagcttaattctgttaattttacttatcattatgcatctttatatttatatatattcttttcaattatgacagGCCATCAATAAGAGTCTGTCATCATTAAGTGATGTTATATTTGCCCTGGCAAAGAAGGAGGACCATGTACCATTTAGGAACTCAAAGCTTACGTATCTTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g05070.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA12G34330.1 (Glycine max), 3'ss of exon 14
gtatttgagaaacactgatacaagcttaattctgttaattttacttatcattatgcatctttatatttatatatattcttttcaattatgac-agGCCATCAATAAGAGTCTGTCATCATTAAGTGATGTTATATTTGCCCTGGCAAAGAAGGAGGACCATGTACCATTTAGGAACTCAAAGCTTACGTATCTTC
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--gtatgtaaaaccctgatgttt-cttatttcacatagttatgcttat--ttgagttctatta-atctaaac---tttctttcatttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCCAAGAAGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTC
upper sequence: Vv19s0014g05070.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA13G36230.2 (Glycine max), 3'ss of exon 15
gtatttgagaaacactgatacaagcttaattctgttaattttacttatcattatgcatctttatatttatatatattct-tttcaattatgac-agGCCATCAATAAGAGTCTGTCATCATTAAGTGATGTTATATTTGCCCTGGCAAAGAAGGAGGACCATGTACCATTTAGGAACTCAAAGCTTACGTATCTTC
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---------gtatgcagagccgtgatgttttctatttcatttacttaagcttctttgatttc-tattaatctaaactttctttcatttgtaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCCAAGAAGGAGGATCATATCCCATTCAGGAACTCAAAGCTCACATACCTAC
upper sequence: Vv19s0014g05070.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA06G41600.1 (Glycine max), 3'ss of exon 14
gtatttgagaaacactgatacaagcttaattctgttaatttta-cttatcattatgcatctttatatttatatatattcttttcaattatga-cagGCCATCAATAAGAGTCTGTCATCATTAAGTGATGTTATATTTGCCCTGGCAAAGAAGGAGGACCATGTACCATTTAGGAACTCAAAGCTTACGTATCTTC
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-------------gtatgtataagcatggcgcttttcattctctcttattcttatttgatttcaaatagtttaaactctctttcgtttgtgatcagGCAATCAACAAAAGTTTATCATCACTGAGTGATGTTATATTTGCCTTAGCCAAGAAGGAGGACCATGTGCCATTCAGAAACTCAAAGCTTACATATCTGC
upper sequence: Vv19s0014g05070.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA12G16580.1 (Glycine max), 3'ss of exon 15
gtatttgagaaacactgatacaagcttaattctgttaattttacttatcattatgcatctttatatttatatatattcttttcaattatgac-agGCCATCAATAAGAGTCTGTCATCATTAAGTGATGTTATATTTGCCCTGGCAAAGAAGGAGGACCATGTACCATTTAGGAACTCAAAGCTTACGTATCTTC
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-------------gtatgcaaagtcgtggtgcttttattctcacttgtgcttatttgatttcacatagtttaaactctctttcatctgtaaccagGCAATCAACAAAAGTTTATCATCACTGAGTGATGTTATATTCGCCTTAGCCAAGAAGGAGGATCATGTGCCATTCAGGAACTCAAAGCTTACATATCTCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttacttatcattatgcatctttatatttatatatattcttttcaattatgacagGCCATCAATAAGAGTCTGTCATCATTAAGTGATGTTATATTTGCCCTGGCAAAGAAGGAGGACCATGTACCATTTAGGAACTCAAAGCTTACGTATCTTC
attatgcatctttata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatttgagaaacactgatacaagcttaattctgttaattttacttatcattatgcatctttatatttatatatattcttttcaattatgacagGCCATCAATAAGAGTCTGTCATCATTAAGTGATGTTATATTTGCCCTGGCAAAGAAGGAGGACCATGTACCATTTAGGAACTCAAAGCTTACGTATCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA