Sequence
atgc intronic sequence ATGC exonic sequence...tttaacaccactgcccaaccccactccacccccagtgtgattttggttggtttttctattattaccaattttttttttttttaaaattttctccatgcagGACTGCTGGTCTAACTTCATTTCCTGATTATTTGGTGTTGCACATGCGGAAATTTGTTATGGAGGAAGGCTGGGTGCCAAAAAAGCTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g03920.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: LOC_Os01g08200.1 (Oryza sativa), 3'ss of exon 13
tttaacaccactgcccaaccccactccacccccagtgtgattttggttggtttttctattattaccaattttttttt---------tttttaaaattttctccatgcagGACTGCTGGTCTAACTTCATTTCCTGATTATTTGGTGTTGCACATGCGGAAATTTGTTATGGAGGAAGGCTGGGTGCCAAAAAAGCTTG
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--------aaatggt-atgttcattatagttttagtataggtctgtttaatgatgtggaaacaggagatggcttcttactaacacattatataacttgttggttttcagGACTGCTGGCTTTAAAACATTTCCTGATTACCTGGTGTTGCAGATGCGCAAGTTTGTAATGGAAGCAGGATGGGTGCCAAAGAAACTAG
upper sequence: Vv19s0014g03920.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA12G22240.1 (Glycine max), 3'ss of exon 13
tttaacaccactgcccaaccccactccacccccagtgtgattttggttggtttttctattattaccaattttttttttttttaaaattttctccat---gcagGACTGCTGGTCTAACTTCATTTCCTGATTATTTGGTGTTGCACATGCGGAAATTTGTTATGGAGGAAGGCTGGGTGCCAAAAAAGCTTG
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tgttgagtggatgac-aatcacatttg--tttaggcattattttgccaagctaatatagtaataacttataaccttattgctgaaacaacatttattccgtagGACTGCAGGTCTGACCTCATTTCCTGATTACCTGGTGTTACATATGCGGAGATTTGTTATGGAGGCAGATTGGGTACCAAAAAAGCTTG
upper sequence: Vv19s0014g03920.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA06G39770.1 (Glycine max), 3'ss of exon 13
tttaacaccactgcccaaccccactccacccccagtgtgattttggttggttt---ttctattattaccaattttttttttttttaaaattttctccatgcagGACTGCTGGTCTAACTTCATTTCCTGATTATTTGGTGTTGCACATGCGGAAATTTGTTATGGAGGAAGGCTGGGTGCCAAAAAAGCTTG
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-ttgactttgttgagtggatgacaatcacatttgtttaggcattatttggccaagataatatagttataaccttattgctgaaacaacatttattccat--agGACTGCAGGTCTGACCTCATTTCCTGATTACCTGGTGTTACATATGCGGAGGTTTGTTATGGAGGCAGGACGGGAACCTAAAAAGCTTG
upper sequence: Vv19s0014g03920.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AT3G20630.1 (Arabidopsis thaliana), 3'ss of exon 14
tttaacaccactgcccaaccccactccacccccagtgtgattttggttggtttttctattattaccaattt---tttttttttttaaaattttctccatgcagGACTGCTGGTCTAACTTCATTTCCTGATTATTTGGTGTTGCACATGCGGAAATTTGTTATGGAGGAAGGCTGGGTGCCAAAAAAGCTTG
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------------gtaagatattgttttttaccgagtgaattctt--ttgcaaccaagattagaatgaaagcaaggcttgacttttggttcccattttatgcagGACAACTGGTTTGACATCTTTCCCAGATTATTTGGTCTTGCACATGCGGAAATTTGTTATGGAGGAAGGCTGGGTGCCAAAGAAACTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttggtttttctattattaccaattttttttttttttaaaattttctccatgcagGACTGCTGGTCTAACTTCATTTCCTGATTATTTGGTGTTGCACATGCGGAAATTTGTTATGGAGGAAGGCTGGGTGCCAAAAAAGCTTG
ttttctccat CT-rich tract
tttttctattattacc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttaacaccactgcccaaccccactccacccccagtgtgattttggttggtttttctattattaccaattttttttttttttaaaattttctccatgcagGACTGCTGGTCTAACTTCATTTCCTGATTATTTGGTGTTGCACATGCGGAAATTTGTTATGGAGGAAGGCTGGGTGCCAAAAAAGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - acaccac
- - - - - - - ccaaccc
- - - - - - - - - - - - -ccacccc
- - - - - - - - - - - - - - - - - - - - - -tggttgg