1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ctcttggttaaaaacagttgattcagcggacccccagtggttgggattgatgctttgttgagttgagtcatatgtatatgtttgtttgtgtttgttgcagGAGAGTGGTGGCGAGGCAGGGGATGGGGAATTGCAGGAAGCCGAGTCGGAGGTCTCATCAAGAGCCATGAGCATGTAACATTCCTACCTCAAGTCATTGA
species | Vitis vinifera |
transcript | Vv18s0089g01240.t01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ACGGTGCATTGGATTGTTACCTTGCTGAAACCAAGTTGAAAGATCCAGTG GAGAGTGGTGGCGAGGCAGGGGATGGGGAATTGCAGGAAGCCGAGTCGGAGEST: gi|87585429|gb|DY474151.1|DY474151
genomic: ACGGTGCATTGGATTGTTACCTTGCTGAAACCAAGTTGAAAGATCCAGTGgtaagttcag ... tttgttgcagGAGAGTGGTGGCGAGGCAGGGGATGGGGAATTGCAGGAAGCCGAGTCGGAG
EST: ACGGTGCATTGGATTGTTACCTTGCTGAAACCAAGTTGAAAGATCCAGTG GAGAGTGGTGGCGAGGCAGGGGATGGGGAATTGCAGGAAGCTGAGTCGGAG
genomic: ACGGTGCATTGGATTGTTACCTTGCTGAAACCAAGTTGAAAGATCCAGTGgtaagttcag ... tttgttgcagGAGAGTGGTGGCGAGGCAGGGGATGGGGAATTGCAGGAAGCCGAGTCGGAG
attgatgctttgttgagttgagtcatatgtatatgtttgtttgtgtttgttgcagGAGAGTGGTGGCGAGGCAGGGGATGGGGAATTGCAGGAAGCCGAGTCGGAGGTCTCATCAAGAGCCATGAGCATGTAACATTCCTACCTCAAGTCATTGA
gattgat putative branch site (score: 4)
atatgtatatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcttggttaaaaacagttgattcagcggacccccagtggttgggattgatgctttgttgagttgagtcatatgtatatgtttgtttgtgtttgttgcagGAGAGTGGTGGCGAGGCAGGGGATGGGGAATTGCAGGAAGCCGAGTCGGAGGTCTCATCAAGAGCCATGAGCATGTAACATTCCTACCTCAAGTCATTGA
ctcttgg
- - - - -aaaaaca
- - - - - - - - - - - - - - -accccca
- - - - - - - - - - - - - - - - - - - ggttggg