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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttataattttgactcatattctggaatctgcacaatattgtttttggtattaaaactcttatccgttcattactcaaactgcagAGTTCTTTTTTTGCACACTTCATGTGCTTTGAGGTTCCTGCATTGGTTCCTCCGGGGGGTCATGCCAATGGTAATAAAACGGGATCCAATGACGATGACG

Basic information

species Vitis vinifera
transcript Vv18s0001g11700.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA09G18840.1 (Glycine max), 3'ss of exon 14
gttataattttgactcatattctggaatctgcacaatattgtttttggtattaaaactct---tatccgttcattactcaaactgcagAGTTCTTTTTTTGCACACTTCATGTGCTTTGAGGTTCCTGCATTGGTTCCTCCGGGGGGTCATGCCAATGGTAATAAAACGGGATCCAATGACGATGACG
||  |  ||| ||     ||||     ||| |||||  || | |||  ||||  || | |   ||     ||||  |  ||| ||||||||||||||||||||||||||||||||||||| |||||| || | |||||||| || |||  ||  ||||| || ||| | ||||   |||| ||||| |
gtggtcgttt-gatattcattc-attttctacacaaatttctctttaatatttcaaatgtatataattcatcatggcataaattgcagAGTTCTTTTTTTGCACACTTCATGTGCTTTGAAGTTCCTACACTTGTTCCTCCTGGAGGTGTTGTTAATGGCAACAAAGCTGGATATGATGATGATGATG

upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA17G36540.1 (Glycine max), 3'ss of exon 14
gttataattttgactcatattctggaatctgcacaatattgtttttggtattaaaactcttatccgttcattact-caaac--tgcagAGTTCTTTTTTTGCACACTTCATGTGCTTTGAGGTTCCTGCATTGGTTCCTCCGGGGGGTCATGCCAATGGTAATAAAACGGGATCCAATGACGATGACG
|| ||  ||| ||     ||||     ||| |||||  |||| |||  ||||  || | |      ||||| |   |||||  ||||||||||||||||||||||||||||||||||||| |||||| || | |||||||| || |||  ||  ||||| || ||| | ||||   |||| ||||| |
gtgatcgttt-gatattcattc-attttctacacaaatttgtctttaatatttcaaatgtatataattcatcatggcaaacgttgcagAGTTCTTTTTTTGCACACTTCATGTGCTTTGAAGTTCCTACACTTGTTCCTCCTGGAGGTGTTGTTAATGGCAACAAAGCTGGATATGATGATGATGATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30130173|gb|CB915512.1|CB915512
EST:     ATGCTTATGCGAAAATGCTGACAATTTTCATCCCACTTCTTGTAGATGAG                         AGTTCNNNNNNNGCACACTTCATGTGCTTTGAGGNTCCTGCATTGGTTCCT
genomic: ATGCTTATGCGAAAATGCTGACAATTTTCATCCCACTTCTTGTAGATGAGgttataattt ... caaactgcagAGTTCTTTTTTTGCACACTTCATGTGCTTTGAGGTTCCTGCATTGGTTCCT
EST: gi|30305614|gb|CB982408.1|CB982408
EST:     ATGCTTATGCGAAAATGCTGACAATTTTCATCCCACTTCTTGTAGATGAG                         AGTTCNNNNNNNGCACACTTCATGTGCTTTGAGGTTCCTGCATTGGTTCCT
genomic: ATGCTTATGCGAAAATGCTGACAATTTTCATCCCACTTCTTGTAGATGAGgttataattt ... caaactgcagAGTTCTTTTTTTGCACACTTCATGTGCTTTGAGGTTCCTGCATTGGTTCCT
EST: gi|161708046|gb|FC056095.1|FC056095
EST:     ATGCTTATGCGAAAATGCTGACAATTTTCATCCCACTTCTTGTAGATGAG                         AGTTCNNNNNNNGCACACTTCATGTGCTTTGAGGTTCCTGCATTGGTTCCT
genomic: ATGCTTATGCGAAAATGCTGACAATTTTCATCCCACTTCTTGTAGATGAGgttataattt ... caaactgcagAGTTCTTTTTTTGCACACTTCATGTGCTTTGAGGTTCCTGCATTGGTTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcacaatattgtttttggtattaaaactcttatccgttcattactcaaactgcagAGTTCTTTTTTTGCACACTTCATGTGCTTTGAGGTTCCTGCATTGGTTCCTCCGGGGGGTCATGCCAATGGTAATAAAACGGGATCCAATGACGATGACG
     atattgtttttggtat  TA-rich tract