Sequence
atgc intronic sequence ATGC exonic sequencegtgactctcatttatatatacatattcattttttttcaaaatgatataatgatatttgttttggaatttagaaagggatccataaccttcttaaattgtgaaaacttttcttcgatttatacacattagATACTGGATCTTAAGAAGAAGCAAGAGAGCCAGGTTCAACTTTTGAAGGAAAAACAAAAAAGTGATGAAGCAGCAAAGCGCTTGCAAGATGAAATACAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g10090.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA04G04380.1 (Glycine max), 3'ss of exon 14
gtgactctcatttatatatacatattcattttttttcaaaatgatataatgatatttgttttggaatttagaaagggatccataaccttcttaaattgtgaaaacttttcttcgatttatacacattagATACTGGATCTTAAGAAGAAGCAAGAGAGCCAGGTTCAACTTTTGAAGGAAAAACAAAAAAGTGATGAAGCAGCAAAGCGCTTGCAAGATGAAATACAAT
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-------------gtgcct-catcctcaaatttttatattaaaat----taaaatttattttctatttcagaag-------ata----ttctaaattaccaaaaaacttttcaaaacaatgcccactagATTCTGGATCTGAAGAAGAAGCAAGAGAGTCAGGTCCAACTTCTGAAGCAAAAGCAAAAAAGTGATGAAGCAGCAAAGAGACTGCAAGATGAAATACAGT
upper sequence: Vv18s0001g10090.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA06G04520.1 (Glycine max), 3'ss of exon 14
gtgactctcatttatatatacatattcattttttttcaaaatgatataatgatatttgttttggaatttagaaagggatccataaccttcttaaattgtgaaaacttttcttcgatttatacacattagATACTGGATCTTAAGAAGAAGCAAGAGAGCCAGGTTCAACTTTTGAAGGAAAAACAAAAAAGTGATGAAGCAGCAAAGCGCTTGCAAGATGAAATACAAT
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-----------------gtgcctcatcctcaaatttttatatgaaat--ttaaatttattttccatttcagaagatattctaaa------ttacaaaaaaaaaacttttcg--aaactctgcccactagATTCTGGATCTGAAGAAGAAGCAAGAGAGTCAGGTCCAACTTCTGAAGCAAAAGCAAAAAAGTGATGAAGCAGCAAAGAGACTGCAAGATGAAATACAGT
upper sequence: Vv18s0001g10090.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA14G09390.1 (Glycine max), 3'ss of exon 14
gtgactctcatttatatatacatattcattttttttcaaaatgatataatgatatttgttttggaatttagaaagggatccataaccttcttaaattgtgaaaacttttcttcgatttatacacattagATACTGGATCTTAAGAAGAAGCAAGAGAGCCAGGTTCAACTTTTGAAGGAAAAACAAAAAAGTGATGAAGCAGCAAAGCGCTTGCAAGATGAAATACAAT
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---------------gtgaggaaactttttttatttccatctatttttcctttacatgatttgaa--ttggaa---------taa---ttctaaattgctaatatcttttcaaaatataca-atgctagATTCTGGATCTAAAGAAGAAACAGGAGAGTCAGGTCCAGCTCTTGAAGCAAAAGCAAAAAAGTGATGAAGCAGCGAAGCGATTACAAGATGAAATACAAT
upper sequence: Vv18s0001g10090.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA17G35780.1 (Glycine max), 3'ss of exon 14
gtgactctcatttatatatacatattcattttttttcaaaatgatataatgatatttgttttggaatttagaaagggatccataaccttcttaaattgtgaaaacttttcttcgatttatacacattagATACTGGATCTTAAGAAGAAGCAAGAGAGCCAGGTTCAACTTTTGAAGGAAAAACAAAAAAGTGATGAAGCAGCAAAGCGCTTGCAAGATGAAATACAAT
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---------------------gtgaggagtcttctttatttccatctatt--tttcctttataagatttgaattgg-------aacaattctaaattgctaatatcttttcgaaatataca-atgctagATTCTGGATCTAAAGAAGAAACAGGAGAGTCAGGTCCAGCTCATGAAGCAAAAGCAAAAAAGTGATGAAGCAGCGAAACGATTGCAAGATGAAATACAAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gggatccataaccttcttaaattgtgaaaacttttcttcgatttatacacattagATACTGGATCTTAAGAAGAAGCAAGAGAGCCAGGTTCAACTTTTGAAGGAAAAACAAAAAAGTGATGAAGCAGCAAAGCGCTTGCAAGATGAAATACAAT
ccataac putative branch site (score: 3)
ttaaattgtgaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgactctcatttatatatacatattcattttttttcaaaatgatataatgatatttgttttggaatttagaaagggatccataaccttcttaaattgtgaaaacttttcttcgatttatacacattagATACTGGATCTTAAGAAGAAGCAAGAGAGCCAGGTTCAACTTTTGAAGGAAAAACAAAAAAGTGATGAAGCAGCAAAGCGCTTGCAAGATGAAATACAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG