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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttggattgctttctgatttgtgaggttatcttagcataagagagtaaatataaaatgagagttactttgtccagGAAAGATTGGCCCTCAAAGAGGATGGTGTTCAACTTGGTCCTGCTCTACTATTCTTTGGATGTCGGAATCGCCGGATG

Basic information

species Vitis vinifera
transcript Vv18s0001g07630.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA02G37850.1 (Glycine max), 3'ss of exon 14
-------------gttttggattg---ctttctgatttgtgaggttatcttagcataagagagt-------aaatataaaatgagagttactttgtccagGAAAGATTGGCCCTCAAAGAGGATGGTGTTCAACTTGGTCCTGCTCTACTATTCTTTGGATGTCGGAATCGCCGGATG
             |  |   ||||   || |   ||   |||  |||  |||   |||||   |       || | |   || |   ||  |||  |||||||||||||| ||||||||||||||| |||||||||||||||||  |||| |||||||||||| ||||||| |  |||
ccaaaatgttcctgaataacattgatactgttgaatacatgaacttaatttatggtaagactctgctttttaattgttgcattatcttttatttacccagGAAAGATTGGTCCTCAAAGAGGATGGCGTTCAACTTGGTCCTGCATTACTCTTCTTTGGATGTAGGAATCGACAAATG

upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA14G36070.1 (Glycine max), 3'ss of exon 14
----------------gttttggattgctttctgatttgtgaggttatcttagcataagagagt-------aaatataaaatgagagttactttgtccagGAAAGATTGGCCCTCAAAGAGGATGGTGTTCAACTTGGTCCTGCTCTACTATTCTTTGGATGTCGGAATCGCCGGATG
                 |       | |  |   ||    ||  |||  |||   |||||   |       || | |   || |   ||  |||  |||||||||||||||||||||||||||||  |||||||||||||||||  |||| |||||||||||| ||||||| |  |||
tccaaaatgttcctgaataacatgataccattgaatccaggaacttaatttatggtaagactttgctttttaattgttgcattatctttgatttacccagGAAAGATTGGCCCTCAAAGAGGATGCCGTTCAACTTGGTCCTGCATTACTCTTCTTTGGATGTAGGAATCGACAAATG

upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA04G10200.1 (Glycine max), 3'ss of exon 14
-------------------------gttttggattgctttctgatttgtgaggttatc-ttagcataagagagtaaatataaaatgagagttactttgtccagGAAAGATTGGCCCTCAAAGAGGATGGTGTTCAACTTGGTCCTGCTCTACTATTCTTTGGATGTCGGAATCGCCGGATG
                          |  || || || |     ||   | ||| ||  |||      |    ||| | |    | |   ||  |||  |||||||||||| || |||||||||||||||||||||||||| |||||  |||| |||||||||||| ||||||| || |||
caaaaatttcaaaatggttagcccaatcatgcatggcat---agttcaggtggtgataattactgcttgttcttaattcttgctttatctttgatttacccagGAAAGATTTGCGCTCAAAGAGGATGGTGTTCAACTTGGCCCTGCAATACTCTTCTTTGGATGTAGGAATCGTCGAATG

upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA06G10180.2 (Glycine max), 3'ss of exon 14
---------------gttttggattgctt--tctgatttgtga-ggttatc-ttagcataagagagt----aaatataaaatgagagttactttgtccagGAAAGATTGGCCCTCAAAGAGGATGGTGTTCAACTTGGTCCTGCTCTACTATTCTTTGGATGTCGGAATCGCCGGATG
                |  || || || |  |     | ||||   ||||  | |||||  |   ||    || | |    | |   ||  |||  |||||||||||| ||||||||||||| |||||||||||  || |||||  |||| |||||||||||| ||||||| ||  ||
acaatggttagtccaatcatgaatggcatagttcaggtggtgataattattataagcatctgcttgttcttaattcttgctttatctttgatttacccagGAAAGATTTGCCCTCAAAGAGGCTGGTGTTCAACAAGGCCCTGCAATACTCTTCTTTGGATGTAGGAATCGTCGATTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30125241|gb|CB910580.1|CB910580
EST:     TCATGGTGGGACCTGGTACTGGCTTGGCACCTTTCAGAGGATTTCTACAG                         GAAAGATTGGCCCTCAAAGAGGATGGTGTTCAACTTGGTCCTGCTCTACTA
genomic: TCATGGTGGGACCTGGTACTGGCTTGGCACCTTTCAGAGGATTTCTACAGgttttggatt ... ctttgtccagGAAAGATTGGCCCTCAAAGAGGATGGTGTTCAACTTGGTCCTGCTCTACTA
EST: gi|27584661|gb|CB007356.1|CB007356
EST:     TCATGGTGGGACCTGGTACTGGCTTGGCACCTTTCAGAGGATTTCTACAG                         GAAAGATTGGCCCTCAAAGAGGATGGTGTTCAACTTGGTCCTGCTCTACTA
genomic: TCATGGTGGGACCTGGTACTGGCTTGGCACCTTTCAGAGGATTTCTACAGgttttggatt ... ctttgtccagGAAAGATTGGCCCTCAAAGAGGATGGTGTTCAACTTGGTCCTGCTCTACTA
EST: gi|30125286|gb|CB910625.1|CB910625
EST:     TCATGGTGGGACCTGGTACTGGCTTGGCACCTTTCAGAGGATTTCTACAG                         GAAAGATTGGCCCTCAAAGAGGATGGTGTTCAACTTGGTCCTGCTCTACTA
genomic: TCATGGTGGGACCTGGTACTGGCTTGGCACCTTTCAGAGGATTTCTACAGgttttggatt ... ctttgtccagGAAAGATTGGCCCTCAAAGAGGATGGTGTTCAACTTGGTCCTGCTCTACTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgaggttatcttagcataagagagtaaatataaaatgagagttactttgtccagGAAAGATTGGCCCTCAAAGAGGATGGTGTTCAACTTGGTCCTGCTCTACTATTCTTTGGATGTCGGAATCGCCGGATG
                                             ctttgtcc  CT-rich tract
                ataagagagtaaatat  TA-rich tract