Sequence
atgc intronic sequence ATGC exonic sequencegtgaatctggaattccttgctcctttcaatggtaatttcatatcttataatatcagattctacattgcagGTTTCAGAGTTGAAGAAGAAACAAGATGCGCAATCTCAACTCTTAAGACAAAAGCAAAAAAGTGATGAGGCTGCAAAACGGTTACAGGATGAGATTCAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g07550.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA02G37800.1 (Glycine max), 3'ss of exon 15
-------gtgaatctggaat-tccttgctcctttcaatggtaatttcatatcttataatatcagattctacattgcagGTTTCAGAGTTGAAGAAGAAACAAGATGCGCAATCTCAACTCTTAAGACAAAAGCAAAAAAGTGATGAGGCTGCAAAACGGTTACAGGATGAGATTCAGA
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gtgcacttattatctggaatgtcttaactctcaataatggccactcaatgttctaaactgatta--tttgctttccagGTCTCTGTGCTGAAGAAGAAACAAGAATCTCAGGCTCAACTGTTGAGACAAAAACATAAAAGTGATGAGGCTGCAAAACGACTACAGGATGAGATCCAGA
upper sequence: Vv18s0001g07550.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA14G36030.1 (Glycine max), 3'ss of exon 15
-------gtgaatctggaat-tccttgctcctttcaatggtaatttcatatcttataatatcagattctacattgcagGTTTCAGAGTTGAAGAAGAAACAAGATGCGCAATCTCAACTCTTAAGACAAAAGCAAAAAAGTGATGAGGCTGCAAAACGGTTACAGGATGAGATTCAGA
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gtgcacttattatctggaatgtctcaagtcttaataatggccactcaatgtggtaaactgatta--tttgctttccagGTCTCTGTGCTGAAGAAGAAACAAGAATCTCAGGCTCAACTGTTGAGACAAAAACAGAAAAGTGATGAGGCTGCAAAACGACTTCAGGATGAGATCCAGA
upper sequence: Vv18s0001g07550.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA04G10080.1 (Glycine max), 3'ss of exon 14
gtgaatctggaattccttgctcctttcaatggtaatttcatatcttataatatcagat-----tctacattgcagGTTTCAGAGTTGAAGAAGAAACAAGATGCGCAATCTCAACTCTTAAGACAAAAGCAAAAAAGTGATGAGGCTGCAAAACGGTTACAGGATGAGATTCAGA
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gtga-tttgttatt--ttacatgtgtcaatgctcaacgcccactcaatgccataaactgattatttgcattgtagGTCTCTGAGTTGAAGAAGAAGCAAGATGCTCAGGCTCAACTTATGAGACAAAAACATAAGAGTGATGAGTTTGCAAAAGGACTTCAGGATGAGATCCAGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttgctcctttcaatggtaatttcatatcttataatatcagattctacattgcagGTTTCAGAGTTGAAGAAGAAACAAGATGCGCAATCTCAACTCTTAAGACAAAAGCAAAAAAGTGATGAGGCTGCAAAACGGTTACAGGATGAGATTCAGA
taatttcatatcttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgaatctggaattccttgctcctttcaatggtaatttcatatcttataatatcagattctacattgcagGTTTCAGAGTTGAAGAAGAAACAAGATGCGCAATCTCAACTCTTAAGACAAAAGCAAAAAAGTGATGAGGCTGCAAAACGGTTACAGGATGAGATTCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG