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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaaaaggaagtgacattttgcatccctttacagttatttgggtccttgaaaaaagtataatattataaccaccttagtatgtattttctattatttatagGATTCACCTTTTCCGGGAGCAACACAAACACCAGTTTCAAACTTGTTGAAGAAAGTAGAGAACGTGAATCCAGGAAGTGCAATAAGTGTTCCCAAACATA

Basic information

species Vitis vinifera
transcript Vv18s0001g05600.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g05600.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA13G01840.1 (Glycine max), 3'ss of exon 14
gtagaaaaggaagtgacattttgcatccctttacagttatttgggtccttgaaaaa--agtataatattat--aaccaccttagtat----gtattttctat-tatttatagGATTCACCTTTTCCGGGAGCAACACAAACACCAGTTTCAAACTTGTTGAAGAAAGTAGAGAACGTGAATCCAGGAAGTGCAATAAGTGTTCCCAAACATA
|||  || |||| |   ||          |||||| |   ||   | | | | | |  | |||  | | ||  |  ||||| | | |    ||  || || | | || |||||| || ||||     |  |||||||||||||||||  |||| |||||||| ||| | |||||||| ||  ||||||||||| | ||  |||| || ||| 
gtaagaatggaatttcaataaaaagaaattttacattatctttccttcataagatattattatgttttcatcaagtcacctaattttttttgtccttcctctgtcttcatagGACTCTCCTTACATTGATGCAACACAAACACCAGTACCAAAGTTGTTGAAAAAAATGGAGAACGTTAAAACAGGAAGTGCAGTGAGCATTCCTAAGCATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaaaaaagtataatattataaccaccttagtatgtattttctattatttatagGATTCACCTTTTCCGGGAGCAACACAAACACCAGTTTCAAACTTGTTGAAGAAAGTAGAGAACGTGAATCCAGGAAGTGCAATAAGTGTTCCCAAACATA
                 ttataac  putative branch site (score: 2)
                                      ttttctatt  putative PPT
                            ttagtatgtattttct  TA-rich tract