Sequence
atgc intronic sequence ATGC exonic sequence...attggattctgttgaatctattgttttatataaatcacttcattctatcaaatttgaaagttttgttaatgatgttgataaaattggaattcttaatcagATTAATCAATTAGAGAGGGACAAGGATGTTGTTGCTCAGGCACAAGCAATTGCAACACTGGAGGCATTACCTCAGCTTTCATTTTCTGTTGTTAATGCTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA17G13080.1 (Glycine max), 3'ss of exon 14
------attggattctgttgaatctattgttttatataaatcacttcattctatcaaatttgaaagttttgttaatgatgttgataaaattggaattcttaatcagATTAATCAATTAGAGAGGGACAAGGATGTTGTTGCTCAGGCACAAGCAATTGCAACACTGGAGGCATTACCTCAGCTTTCATTTTCTGTTGTTAATGCTC
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atgctcattcatttgtgatggtgtttgtattttgtacctttcactat----catagtcttttgtagttat-ttattgattctag-acatttggcttcttcttttagATCAATCAATTAGAGAAGGACAAAGATGTTATTGCTCAGGCACAAGCAATTGCAGCCCTTGAGGCATCCCCACAGCTATCATTTTCTATTGTTAATGCCC
upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA05G07920.1 (Glycine max), 3'ss of exon 14
-attggattctgttgaatctattgttttatataaatcacttcattctatcaa-atttgaaagttttgttaatgatgttgataaaattggaattcttaatcagATTAATCAATTAGAGAGGGACAAGGATGTTGTTGCTCAGGCACAAGCAATTGCAACACTGGAGGCATTACCTCAGCTTTCATTTTCTGTTGTTAATGCTC
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catttgtgatgtttgtatttagtatctt-tctctatcatagccttttgtaattggttttttattgatttattgattctag-atatttggtttcttcttttagATCAATCAATTAGAGAAGGACAAAGATGTTATTGCTCAGGCACAAGCAATTGCAGCCCTTGAGGCATCCCCACAGCTATCATTTTCTATTGTAAATGCCC
upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AT1G73960.1 (Arabidopsis thaliana), 3'ss of exon 14
attggattctgttgaatctattgttttatataaatcacttcattctatcaaatttgaaagtt--ttgttaatgatgttgataaaat--tggaattcttaatcagATTAATCAATTAGAGAGGGACAAGGATGTTGTTGCTCAGGCACAAGCAATTGCAACACTGGAGGCATTACCTCAGCTTTCATTTTCTGTTGTTAATGCTC
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---gtgttgtgctcttacttctagacatctcaaaatcctacattg-gttacagttcatgtttaatcgtttctcacacttgtgggtttctgtcacttttgatcagGTCAATCAACTAGAGAAGGACGGAGATGTTGTTGCTCAGGCACAAGCAATTGCGTCACTTGAAGCCTTAAAACAACACTCCTTTTCCATTGTGAATGCAC
upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: EFJ31790 (Selaginella moellendorffii), 3'ss of exon 14
attggattctgttgaatctattgttttatataaatcacttcattctatcaaatttgaaagttttgttaatgatgttgataaaattggaattcttaatcagATTAATCAATTAGAGAGGGACAAGGATGTTGTTGCTCAGGCACAAGCAATTGCAACACTGGAGGCATTACCTCAGCTTTCATTTTCTGTTGTTAATGCTC
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---------------------------------------gtaagttgtaaacctc---agcattctctatagcttctcttatttttgcattccga--cagATTAATCAACTAGAGAGAGACAAGGATGCTGTGGCACAGTTGCAAGCAATTGCAGCTCTACAAAAGCTACCTGTG---TCGTTTTCGATA----------
upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: EFJ38066 (Selaginella moellendorffii), 3'ss of exon 14
attggattctgttgaatctattgttttatataaatcacttcattctatcaaatttgaaagttttgttaatgatgttgataaaattggaattcttaatcagATTAATCAATTAGAGAGGGACAAGGATGTTGTTGCTCAGGCACAAGCAATTGCAACACTGGAGGCATTACCTCAGCTTTCATTTTCTGTTGTTAATGCTC
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---------------------------------------gtaagttgtaaacctc---agcattctctatagcttcttttatttttgcattccga--cagATTAATCAACTAGAGAGAGACAAGGATGCTGTGGCACAGTTGCAAGCAATTGCAGCTCTACAAAAGCTACCTGTG---TCGTTTTCGATA---------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatcaaatttgaaagttttgttaatgatgttgataaaattggaattcttaatcagATTAATCAATTAGAGAGGGACAAGGATGTTGTTGCTCAGGCACAAGCAATTGCAACACTGGAGGCATTACCTCAGCTTTCATTTTCTGTTGTTAATGCTC
ttctt CT-rich tract
aatttgaaagtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attggattctgttgaatctattgttttatataaatcacttcattctatcaaatttgaaagttttgttaatgatgttgataaaattggaattcttaatcagATTAATCAATTAGAGAGGGACAAGGATGTTGTTGCTCAGGCACAAGCAATTGCAACACTGGAGGCATTACCTCAGCTTTCATTTTCTGTTGTTAATGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - ctgttga
- - - - - - - - - - - - - - - -aaatcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaaa