Sequence
atgc intronic sequence ATGC exonic sequence...tgtaattttggtttaatgcagtattctgatgctggaattcttagtagttttgttatttacactttaattttcaaatattgtgatttgctttgttaaacagGGATTATGGTTGCGTCTTTTGAAATTGGGAGCAACTGATGATCCTCTCTCATCATTTGAATATGGTACAATCCTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g03950.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: LOC_Os01g39380.2 (Oryza sativa), 3'ss of exon 14
tgtaattttggtttaatgcagtattctgatgctggaattcttagtagttttgttatttacactttaattttcaaatattgtg-atttgctttgttaa--acagGGATTATGGTTGCGTCTTTTGAAATTGGGAGCAACTGATGATCCTCTCTCATCATTTGAATATGGTACAATCCTTG
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-atataactggctca-tgcataaacaatacatattcatgcttgaca-tgttgcacatcacaaattgtgagcatatcatcgagcatctgcccttttattttcagGGACTGTGGCTTCGTCTTCTGAGACTTGGAGCAACTGAGGATCCCCTTTCATCATTTGAATATGGCACCATTCTTG
upper sequence: Vv17s0000g03950.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GRMZM2G074572_T01 (Zea mays), 3'ss of exon 14
tgtaattttggtttaatgcagtattctg-atgctggaattcttagtagttttgttatttacactttaattttcaaatattgtgatttgctttgttaaac--agGGATTATGGTTGCGTCTTTTGAAATTGGGAGCAACTGATGATCCTCTCTCATCATTTGAATATGGTACAATCCTTG
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---cccactcgccacaaacactacacaacattatggcaccattattgtttattatgtatgcacataagcatgttattactaagaccatgcatattgtccccagGGACTCTGGCTTCGTCTTCTGAGACTAGGGGCAACTGAGGATCCTCTCTCATCTTTTGAATATGGCACCATCCTAG
upper sequence: Vv17s0000g03950.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA08G04510.1 (Glycine max), 3'ss of exon 14
tgtaattttggtttaatgcagtattctgatgctgga---attcttagtagttttgttatttacactttaattttcaaatat-tgtgatttgctttgttaaacagGGATTATGGTTGCGTCTTTTGAAATTGGGAGCAACTGATGATCCTCTCTCATCATTTGAATATGGTACAATCCTTG
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---tggtttggttttattccgttttcttgcagaaaagacaaccttgtatcttcttttaattccatctgcttttctctttatacattgtctatctcatcac-cagGGTTTATGGCTGCGGCTTCTTAAACTGGGAGCAACAGATGATCCTCTCTCATCCTTTGAATATGGAACGATACTCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agttttgttatttacactttaattttcaaatattgtgatttgctttgttaaacagGGATTATGGTTGCGTCTTTTGAAATTGGGAGCAACTGATGATCCTCTCTCATCATTTGAATATGGTACAATCCTTG
ctttaat putative branch site (score: 4)
tttgcttt putative PPT
ttatttacactttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtaattttggtttaatgcagtattctgatgctggaattcttagtagttttgttatttacactttaattttcaaatattgtgatttgctttgttaaacagGGATTATGGTTGCGTCTTTTGAAATTGGGAGCAACTGATGATCCTCTCTCATCATTTGAATATGGTACAATCCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - aatgcag
- - - - - - - - - - - - - -gatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaatat