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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttttatttgaataccatttcgtcctatttacatacctttctaaaaaggatgaattttagcatattttgaaaaataaaaaataaaagttgtataccatttgtgcctcttgcagTCACACCCTGGTGGTTTGCTCTTCACAAAATTCGGTAGCAACCAAACTGCTCTTCTTGACTTGGCTTTCCCG

Basic information

species Vitis vinifera
transcript Vv17s0000g01550.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA05G03270.1 (Glycine max), 3'ss of exon 10
gtatttttatttgaataccattt-cgtcctatttacatacctttctaaaaaggatgaattttagcatattttgaaaaataaaaaataaaagttgtataccatttgtgcctcttgcagTCACACCCTGGTGGTTTGCTCTTCACAAAATTCGGTAGCAACCAAACTGCTCTTCTTGACTTGGCTTTCCCG
             ||||   | |   |   ||| |   |  || ||    |  |    | | |  || | |  | || | |  | | |  | | |||  |  |||| ||   |||||||||| |||||||||||||| || |||||||| |||||||| || ||||| |||||||||||||||||||| 
-------------aatattctatatatttgattgattgaatttccttcccatcactggtctaa--atttctccataagtgattatttattgatatatgactattgttccc--tgcagTCACATCCTGGTGGTTTGCTTTTTACAAAATTTGGTAGCAATCAGACTGCCCTTCTTGACTTGGCTTTCCCA

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA17G13850.1 (Glycine max), 3'ss of exon 12
gtatttttatttgaataccatttcgtcctatttacatacctttctaaaaaggatgaattttagcatattttgaaaaataaaaaataaaagttgtataccatttgtgcctcttgcagTCACACCCTGGTGGTTTGCTCTTCACAAAATTCGGTAGCAACCAAACTGCTCTTCTTGACTTGGCTTTCCCG
               | |||| |  |   ||| |   |  || ||    |  |    | | |  || | |  | || |    | |  || |  ||||  | |  |    | |||||||||| |||||||||||||| || |||||||| |||||||| || ||||| ||||| |||||||||||||| 
------------atgttccatat-atttgattgattgaatttccttcccatcactggtctaa--atttctccataagtggttattttaa-tgatatataactatttttccctgcagTCACATCCTGGTGGTTTGCTTTTTACAAAATTTGGTAGCAATCAGACTGCCCTTCTCGACTTGGCTTTCCCA

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA06G17940.1 (Glycine max), 3'ss of exon 14
gtatttttatttgaataccatttcgtcctatttacatacctttctaaaaaggatgaattttagcatattttgaaaaataaaaaataaaagttgtataccatttgtgcctcttgcagTCACACCCTGGTGGTTTGCTCTTCACAAAATTCGGTAGCAACCAAACTGCTCTTCTTGACTTGGCTTTCCCG
          ||| ||||| |      |  || |  |    ||  |     | |     ||||| | | |     | ||    || |   || |  ||  ||| |    |||||||||||| ||||| |||||||| || ||||| ||||| || || || |||||||||||||| ||||||||||| 
----------ttggataccctaagtatcctttgaatttttctttcattcttggtctgcattagcgtgtataagtgattatgttatta---tttttaactgttttt---ccttgcagTCACATCCTGGAGGTTTGCTTTTTACAAAGTTCGGCAGTAATCAGACTGCTCTTCTTGATTTGGCTTTCCCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30255057|gb|CB971504.1|CB971504
EST:     ATGTTGTCATAATTGGCTCCCATACTCATACTGACAATCGCAAGGAAAAG                         TCACACCCTGGTGGTTTGCTCTTCACAAAATTCGGTAGCAACCAAACTGCT
genomic: ATGTCGTCATAATTGGTTCCCATACTCATACTGACAATCGCAAGGAAAAGgtatttttat ... cctcttgcagTCACACCCTGGTGGTTTGCTCTTCACAAAATTCGGTAGCAACCAAACTGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcatattttgaaaaataaaaaataaaagttgtataccatttgtgcctcttgcagTCACACCCTGGTGGTTTGCTCTTCACAAAATTCGGTAGCAACCAAACTGCTCTTCTTGACTTGGCTTTCCCG
                                           tgcctctt  CT-rich tract
     attttgaaaaataaaa  TA-rich tract