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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagggatgcttagacttatgtctcttactgttcatattgtatttttactcctgtttcttttttctttttctaatttttataaactctgtgtagGAAACTTGACTCGCAAACTTTCAAGTGCTAGCAGTGTAGGCAGCATGGAGGAAAGCTATTTTCTGCAAGCCTCTTTAGACCCATCTGACAGTTTATCTGA

Basic information

species Vitis vinifera
transcript Vv16s0098g00540.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0098g00540.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AT1G79830.4 (Arabidopsis thaliana), 3'ss of exon 15
gtaagggatgcttagacttatgtctcttactgttcatattgtatttttactcctgtttcttttttctttttctaatttttataaactctgtgtagGAAACTTGACTCGCAAACTTTCAAGTGCTAGCAGTGTAGGCAGCATGGAGGAAAGCTATTTTCTGCAAGCCTCTTTAGACCCATCTGACAGTTTATCTGA
                 | |||  |||     |  ||| |     || |    |    | ||   | | |   | |  |||   | |   |  ||||| |||| || | || || ||||| || |||||  | || ||||||||||| ||||||||||||||||| ||| | ||  | || || |  || |||||
----------------gtgatgcatctag--atctatactactgcttaataagtcaggcattgcacatctgtaattcattaactattgcat-cagGAAGCTTGCCTAGAAAGCTATCAAGCGCAAGCAGCCTTGGAAGCATGGAGGAGAGCTATTTTCTGCAAGCTTCTCTTGATTCTTCAGATAAATTTTCTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71872457|gb|DT021512.1|DT021512
EST:     TGTATCCAATCAAACTCCAAACAAAAAGCAGAGTTCTGGTTTTGAAAATG                         GAAACTTGACTCGCAAACTTTCAAGTGCTAGCAGTGTAGGCAGCATGGAGG
genomic: TGTATCCAATCAAACTCCAAACAAAAAGCAGAGTTCTGGTTTTGAAAATGgtaagggatg ... ctctgtgtagGAAACTTGACTCGCAAACTTTCAAGTGCTAGCAGTGTAGGCAGCATGGAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatttttactcctgtttcttttttctttttctaatttttataaactctgtgtagGAAACTTGACTCGCAAACTTTCAAGTGCTAGCAGTGTAGGCAGCATGGAGGAAAGCTATTTTCTGCAAGCCTCTTTAGACCCATCTGACAGTTTATCTGA
                             ttctaat  putative branch site (score: 2)
             tgtttcttttttcttt  TA-rich tract